Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2271602..2271870 | Replicon | chromosome |
| Accession | NZ_CP042246 | ||
| Organism | Escherichia coli strain PU-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2271730..2271832 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2271602..2271870 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FQU83_RS12785 | 2268156..2268818 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FQU83_RS12790 | 2268841..2269497 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| FQU83_RS12795 | 2269599..2269829 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FQU83_RS12800 | 2269968..2270342 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FQU83_RS12805 | 2270346..2271218 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| FQU83_RS12810 | 2271231..2271572 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2271602..2271870 | - | 269 | - | - | Antitoxin |
| - | 2271730..2271832 | + | 103 | - | - | Toxin |
| FQU83_RS12815 | 2271967..2272623 | + | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| FQU83_RS12820 | 2272624..2272815 | - | 192 | WP_001296140.1 | YebW family protein | - |
| FQU83_RS12825 | 2272920..2273156 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FQU83_RS12830 | 2273274..2274713 | - | 1440 | WP_101357011.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T135048 NZ_CP042246:2271730-2271832 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT135048 NZ_CP042246:c2271870-2271602 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
