Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2255979..2256060 | Replicon | chromosome |
| Accession | NZ_CP042220 | ||
| Organism | Dickeya poaceiphila strain NCPPB 569 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2255980..2256060 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2255979..2256060 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Dpoa569_RS10010 | 2251661..2253595 | + | 1935 | WP_042870406.1 | protein kinase YeaG | - |
| Dpoa569_RS10015 | 2253632..2254906 | + | 1275 | WP_042873899.1 | YeaH/YhbH family protein | - |
| Dpoa569_RS10020 | 2255263..2255907 | + | 645 | WP_050569438.1 | DNA/RNA non-specific endonuclease | - |
| - | 2255979..2256060 | + | 82 | - | - | Antitoxin |
| - | 2255980..2256060 | - | 81 | - | - | Toxin |
| Dpoa569_RS10025 | 2256236..2256574 | - | 339 | WP_042870402.1 | YebY family protein | - |
| Dpoa569_RS10030 | 2256824..2257222 | + | 399 | WP_042870401.1 | hypothetical protein | - |
| Dpoa569_RS10035 | 2257483..2257992 | - | 510 | WP_042870399.1 | non-heme ferritin | - |
| Dpoa569_RS10040 | 2258269..2259147 | - | 879 | WP_042870397.1 | copper homeostasis membrane protein CopD | - |
| Dpoa569_RS10045 | 2259151..2259531 | - | 381 | WP_128569710.1 | copper homeostasis periplasmic binding protein CopC | - |
| Dpoa569_RS10050 | 2259695..2259925 | + | 231 | WP_042870395.1 | DNA polymerase III subunit theta | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2251661..2276431 | 24770 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 81 bp
>T134999 NZ_CP042220:c2256060-2255980 [Dickeya poaceiphila]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
Antitoxin
Download Length: 82 bp
>AT134999 NZ_CP042220:2255979-2256060 [Dickeya poaceiphila]
TAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TT
TAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TT
