Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC(toxin)
Location 2239899..2240587 Replicon chromosome
Accession NZ_CP041875
Organism Mycobacterium tuberculosis strain 1-0007P6C4

Toxin (Protein)


Gene name vapC Uniprot ID P0A653
Locus tag FPJ31_RS10400 Protein ID WP_003409958.1
Coordinates 2239899..2240318 (-) Length 140 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ28
Locus tag FPJ31_RS10405 Protein ID WP_003409968.1
Coordinates 2240327..2240587 (-) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FPJ31_RS10375 2235356..2236105 + 750 WP_003908776.1 hypothetical protein -
FPJ31_RS10380 2236102..2236848 + 747 WP_016719162.1 hypothetical protein -
FPJ31_RS10385 2237045..2237650 - 606 Protein_2052 amino acid permease -
FPJ31_RS10390 2237829..2238515 - 687 WP_003409954.1 immunoprotective protein Mpt64 -
FPJ31_RS10395 2238706..2239674 - 969 WP_003899116.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
FPJ31_RS10400 2239899..2240318 - 420 WP_003409958.1 type II toxin-antitoxin system VapC family toxin Toxin
FPJ31_RS10405 2240327..2240587 - 261 WP_003409968.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
FPJ31_RS10410 2240730..2242406 + 1677 WP_003899118.1 PecA family PE domain-processing aspartic protease -
FPJ31_RS10415 2242394..2243047 - 654 WP_003409976.1 cutinase Cfp21 -
FPJ31_RS10420 2243162..2243392 + 231 WP_003409980.1 DUF167 domain-containing protein -
FPJ31_RS10425 2243477..2244383 - 907 Protein_2060 ArgP/LysG family DNA-binding transcriptional regulator -
FPJ31_RS10430 2244492..2245091 + 600 WP_003409989.1 L-lysine exporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(1-125)

Antitoxin

Antitoxin VapB-like

(2-81)


Sequences

Toxin        


Download         Length: 140 a.a.        Molecular weight: 14724.89 Da        Isoelectric Point: 7.9535

>T134527 WP_003409958.1 NZ_CP041875:c2240318-2239899 [Mycobacterium tuberculosis]
MIVDTSAVVALVQGERPHATLVAAALAGAHSPVMSAPTVAECLIVLTARHGPVARTIFERLRSEIGLSVSSFTAEHAAAT
QRAFLRYGKGRHRAALNFGDCMTYATAQLGHQPLLAVGNDFPQTDLEFRGVVGYWPGVA

Download         Length: 420 bp

>T134527 NZ_CP041875:c2240318-2239899 [Mycobacterium tuberculosis]
ATGATCGTGGACACAAGCGCCGTGGTGGCCCTGGTTCAAGGCGAGCGGCCGCACGCCACCCTGGTCGCGGCCGCCCTGGC
CGGCGCCCATAGCCCCGTCATGTCTGCACCCACCGTCGCCGAATGCCTGATTGTCTTGACCGCCCGTCACGGCCCCGTTG
CGCGCACGATCTTCGAACGACTTCGCAGCGAAATCGGCTTGAGCGTGTCATCTTTCACCGCCGAGCATGCCGCTGCCACG
CAACGAGCCTTTCTGCGATACGGCAAGGGGCGCCACCGCGCGGCTCTCAACTTCGGAGACTGTATGACGTACGCGACCGC
CCAGCTGGGCCACCAACCACTGCTGGCCGTCGGCAACGACTTCCCGCAAACCGACCTTGAGTTCCGCGGCGTCGTCGGCT
ACTGGCCAGGCGTCGCGTAA

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9528.88 Da        Isoelectric Point: 5.1007

>AT134527 WP_003409968.1 NZ_CP041875:c2240587-2240327 [Mycobacterium tuberculosis]
VALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLESRAGDREAQLLDILRTEIWPLLADRSPITKLEREQILGY
DPATGV

Download         Length: 261 bp

>AT134527 NZ_CP041875:c2240587-2240327 [Mycobacterium tuberculosis]
GTGGCGCTGAATATCAAAGACCCTGAGGTAGACCGACTAGCCGCCGAACTCGCTGACCGGCTGCACACCAGCAAGACTGC
CGCCATCCGGCATGCCCTGTCTGCCCAGCTGGCGTTTTTGGAGTCGCGCGCCGGCGACCGTGAGGCACAACTTCTCGACA
TCTTGCGTACCGAAATCTGGCCCCTGCTTGCCGACCGCTCCCCCATCACCAAGCTCGAGCGCGAACAAATCCTCGGCTAC
GACCCCGCAACCGGAGTCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A829C4H9

Antitoxin

Source ID Structure
AlphaFold DB A0A829C483

References