Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4339853..4340124 | Replicon | chromosome |
| Accession | NZ_CP041623 | ||
| Organism | Escherichia coli O157:H7 strain ATCC 43888 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4339891..4339994 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4339853..4340124 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FNZ21_RS21795 | 4337010..4338449 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FNZ21_RS21800 | 4338567..4338803 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FNZ21_RS21805 | 4338908..4339099 | + | 192 | WP_001296140.1 | YebW family protein | - |
| FNZ21_RS21810 | 4339100..4339756 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 4339853..4340124 | + | 272 | - | - | Antitoxin |
| - | 4339891..4339994 | - | 104 | - | - | Toxin |
| FNZ21_RS21815 | 4340152..4340493 | - | 342 | WP_000976483.1 | YebY family protein | - |
| FNZ21_RS21820 | 4340506..4341378 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| FNZ21_RS21825 | 4341382..4341756 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| FNZ21_RS21830 | 4341895..4342125 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FNZ21_RS21835 | 4342227..4342883 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| FNZ21_RS21840 | 4342907..4343569 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T128825 NZ_CP041623:c4339994-4339891 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT128825 NZ_CP041623:4339853-4340124 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
