Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2089944..2090215 | Replicon | chromosome |
| Accession | NZ_CP041442 | ||
| Organism | Escherichia coli strain YPE12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2090074..2090177 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2089944..2090215 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FNP80_RS11885 | 2086499..2087161 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| FNP80_RS11890 | 2087185..2087841 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FNP80_RS11895 | 2087943..2088173 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FNP80_RS11900 | 2088312..2088686 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FNP80_RS11905 | 2088690..2089562 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| FNP80_RS11910 | 2089575..2089916 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2089944..2090215 | - | 272 | - | - | Antitoxin |
| - | 2090074..2090177 | + | 104 | - | - | Toxin |
| FNP80_RS11915 | 2090312..2090968 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| FNP80_RS11920 | 2090969..2091160 | - | 192 | WP_001338167.1 | YebW family protein | - |
| FNP80_RS11925 | 2091265..2091501 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| FNP80_RS11930 | 2091619..2093058 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T128628 NZ_CP041442:2090074-2090177 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT128628 NZ_CP041442:c2090215-2089944 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
