Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2756599..2756870 | Replicon | chromosome |
| Accession | NZ_CP041425 | ||
| Organism | Escherichia coli strain STEC388 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2756637..2756740 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2756599..2756870 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FNE85_RS13505 | 2753756..2755195 | + | 1440 | WP_001383086.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FNE85_RS13510 | 2755313..2755549 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FNE85_RS13515 | 2755654..2755845 | + | 192 | WP_001313035.1 | YebW family protein | - |
| FNE85_RS13520 | 2755846..2756502 | - | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| - | 2756599..2756870 | + | 272 | - | - | Antitoxin |
| - | 2756637..2756740 | - | 104 | - | - | Toxin |
| FNE85_RS13525 | 2756898..2757239 | - | 342 | WP_000976472.1 | YebY family protein | - |
| FNE85_RS13530 | 2757252..2758124 | - | 873 | WP_096128752.1 | copper homeostasis membrane protein CopD | - |
| FNE85_RS13535 | 2758128..2758502 | - | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| FNE85_RS13540 | 2758641..2758871 | + | 231 | WP_075825954.1 | DNA polymerase III subunit theta | - |
| FNE85_RS13545 | 2758973..2759629 | + | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| FNE85_RS13550 | 2759653..2760315 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T128421 NZ_CP041425:c2756740-2756637 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT128421 NZ_CP041425:2756599-2756870 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
