Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2045992..2046137 | Replicon | chromosome |
| Accession | NZ_CP040833 | ||
| Organism | Klebsiella pneumoniae strain SH12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2046028..2046130 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2045992..2046137 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FHY43_RS10070 (FHY43_10220) | 2041122..2043182 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| FHY43_RS10075 (FHY43_10225) | 2043186..2043845 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| FHY43_RS10080 (FHY43_10230) | 2043924..2044154 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FHY43_RS10085 (FHY43_10235) | 2044267..2044641 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FHY43_RS10090 (FHY43_10240) | 2044645..2045514 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| FHY43_RS10095 (FHY43_10245) | 2045531..2045869 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2045992..2046137 | - | 146 | - | - | Antitoxin |
| - | 2046028..2046130 | + | 103 | - | - | Toxin |
| FHY43_RS10100 | 2046505..2046648 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| FHY43_RS10105 (FHY43_10255) | 2046753..2047721 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| FHY43_RS10110 (FHY43_10260) | 2047878..2048531 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| FHY43_RS10115 (FHY43_10265) | 2048528..2048719 | - | 192 | WP_002911395.1 | YebW family protein | - |
| FHY43_RS10120 (FHY43_10270) | 2048817..2049056 | - | 240 | WP_002911393.1 | YebV family protein | - |
| FHY43_RS10125 (FHY43_10275) | 2049172..2050605 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T127068 NZ_CP040833:2046028-2046130 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT127068 NZ_CP040833:c2046137-2045992 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
