Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) vapBC/PIN-CcdA
Location 636194..636870 Replicon chromosome
Accession NZ_CP040688
Organism Mycobacterium tuberculosis complex sp. N0052

Toxin (Protein)


Gene name vapC Uniprot ID G0TPQ9
Locus tag FF951_RS02860 Protein ID WP_003898500.1
Coordinates 636194..636607 (-) Length 138 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID G0TPR0
Locus tag FF951_RS02865 Protein ID WP_003402915.1
Coordinates 636604..636870 (-) Length 89 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FF951_RS02830 (FF951_02870) 631539..631841 - 303 WP_003402896.1 DUF3349 domain-containing protein -
FF951_RS02835 (FF951_02875) 631901..632179 - 279 WP_003402901.1 hypothetical protein -
FF951_RS02840 (FF951_02880) 632176..633429 - 1254 WP_003402904.1 inorganic phosphate transporter -
FF951_RS02845 (FF951_02885) 633549..633935 - 387 WP_003402907.1 VOC family protein -
FF951_RS02850 (FF951_02890) 633998..634882 - 885 WP_003402909.1 SDR family oxidoreductase -
FF951_RS02855 (FF951_02895) 634978..635880 - 903 WP_003915439.1 1,4-dihydroxy-2-naphthoyl-CoA synthase -
FF951_RS02860 (FF951_02900) 636194..636607 - 414 WP_003898500.1 type II toxin-antitoxin system VapC family toxin Toxin
FF951_RS02865 (FF951_02905) 636604..636870 - 267 WP_003402915.1 type II toxin-antitoxin system CcdA family antitoxin Antitoxin
FF951_RS02870 (FF951_02910) 637062..638777 - 1716 WP_003402917.1 fatty-acid--CoA ligase FadD8 -
FF951_RS02875 (FF951_02915) 638855..640459 + 1605 WP_003402920.1 amidohydrolase -
FF951_RS02880 (FF951_02920) 640456..641436 + 981 WP_003402923.1 o-succinylbenzoate synthase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(13-129)

Antitoxin

(19-61)


Sequences


Toxin        


Download         Length: 138 a.a.        Molecular weight: 14667.78 Da        Isoelectric Point: 7.3603

>T126502 WP_003898500.1 NZ_CP040688:c636607-636194 [Mycobacterium tuberculosis complex sp. N0052]
VRASPTSPPEQVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVDAALEELRQV
PVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARAWPSAHAIG

Download         Length: 414 bp

>T126502 NZ_CP040688:c636607-636194 [Mycobacterium tuberculosis complex sp. N0052]
GTGAGAGCATCGCCCACTTCGCCGCCGGAGCAGGTGGTCGTCGACGCGAGTGCCATGGTGGATCTACTGGCTCGCACTAG
CGATCGGTGCTCTGCGGTGCGCGCGCGGCTGGCTCGGACCGCGATGCACGCGCCGGCGCACTTCGATGCAGAGGTGTTGT
CGGCGCTGGGGCGCATGCAGCGCGCCGGCGCACTCACCGTTGCCTATGTCGATGCGGCACTGGAGGAGTTGCGACAGGTG
CCGGTGACTCGACACGGTCTTTCGTCGCTGCTTGCTGGAGCGTGGTCGCGCCGCGACACCCTCCGCCTGACCGATGCCCT
CTACGTCGAGCTGGCCGAAACGGCAGGTCTGGTGTTGTTGACCACCGACGAAAGATTGGCACGCGCCTGGCCCTCGGCTC
ACGCCATCGGCTGA

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 9543.79 Da        Isoelectric Point: 4.5994

>AT126502 WP_003402915.1 NZ_CP040688:c636870-636604 [Mycobacterium tuberculosis complex sp. N0052]
MLSRRTKTIVVCTLVCMARLNVYVPDELAERARARGLNVSALTQAAISAELENSATDAWLEGLEPRSTGARHDDVLGAID
AARDEFEA

Download         Length: 267 bp

>AT126502 NZ_CP040688:c636870-636604 [Mycobacterium tuberculosis complex sp. N0052]
TTGTTGAGCCGGCGCACGAAAACGATCGTTGTGTGTACATTGGTGTGTATGGCTCGGTTGAACGTGTATGTGCCCGACGA
ATTGGCGGAGCGCGCCAGGGCGCGGGGCTTGAACGTCTCGGCGCTGACTCAGGCCGCGATCAGTGCCGAGTTGGAGAACT
CCGCAACCGATGCGTGGCTTGAGGGGTTGGAACCCAGAAGCACCGGCGCTCGGCATGATGACGTGCTGGGTGCGATCGAT
GCCGCTCGCGATGAGTTCGAAGCGTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB G0TPQ9


Antitoxin

Source ID Structure
AlphaFold DB G0TPR0

References