Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1956646..1956812 | Replicon | chromosome |
| Accession | NZ_CP040677 | ||
| Organism | Kosakonia sacchari strain DSM 107661 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1956706..1956808 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1956646..1956812 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGE25_RS09335 | 1951845..1953920 | + | 2076 | WP_160269700.1 | oligopeptidase B | - |
| FGE25_RS09340 | 1953902..1954564 | - | 663 | WP_020454107.1 | exodeoxyribonuclease X | - |
| FGE25_RS09345 | 1954576..1954806 | - | 231 | WP_020454106.1 | DNA polymerase III subunit theta | - |
| FGE25_RS09350 | 1954944..1955318 | + | 375 | WP_020454105.1 | CopC domain-containing protein YobA | - |
| FGE25_RS09355 | 1955319..1956191 | + | 873 | WP_045511349.1 | copper homeostasis membrane protein CopD | - |
| FGE25_RS09360 | 1956210..1956548 | + | 339 | WP_044489676.1 | YebY family protein | - |
| - | 1956646..1956812 | - | 167 | - | - | Antitoxin |
| - | 1956706..1956808 | + | 103 | - | - | Toxin |
| FGE25_RS09365 | 1957444..1958391 | - | 948 | WP_160269703.1 | VirK/YbjX family protein | - |
| FGE25_RS09370 | 1958566..1959210 | + | 645 | WP_045511355.1 | protein-serine/threonine phosphatase | - |
| FGE25_RS09375 | 1959211..1959402 | - | 192 | WP_017456957.1 | YebW family protein | - |
| FGE25_RS09380 | 1959508..1959747 | - | 240 | WP_017456958.1 | DUF1480 family protein | - |
| FGE25_RS09385 | 1959864..1961303 | - | 1440 | WP_174240573.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T126475 NZ_CP040677:1956706-1956808 [Kosakonia sacchari]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTTTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 167 bp
>AT126475 NZ_CP040677:c1956812-1956646 [Kosakonia sacchari]
AGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGGCGTCAGGTTTTCCAGTCCGCGACAAAAGTGGTC
AGAAAAA
AGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGGCGTCAGGTTTTCCAGTCCGCGACAAAAGTGGTC
AGAAAAA
