Detailed information of TA system TA125447

Bioinformatically predicted

Overview

TA module

• Type: I
• Classification (family/domain): hok-sok/-
• Location: 1951963..1952188
• Replicon: chromosome
• Accession: NZ_CP040313
• Organism: Escherichia coli strain M7638

Toxin (Protein)

• Gene name: hokW
• Uniprot ID: -
• Locus tag: FEL02_RS09055
• Protein ID: WP_000813263.1
• Coordinates: 1952033..1952188 (+)
• Length: 52 a.a.

Antitoxin (RNA)

Gene name	sokW
Locus tag	-
Coordinates	1951963..1952021 (-)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FEL02_RS09025	1947238..1948329	+	1092	WP_001205823.1	hypothetical protein	-
FEL02_RS09030	1948336..1949082	+	747	WP_000788751.1	ATP-binding protein	-
FEL02_RS09035	1949104..1949874	+	771	WP_000450992.1	DUF1627 domain-containing protein	-
FEL02_RS09040	1949890..1950303	+	414	WP_001151233.1	DUF977 family protein	-
FEL02_RS09045	1950655..1951428	-	774	WP_000160654.1	alpha/beta hydrolase	-
-	1951963..1952021	-	59	-	-	Antitoxin
FEL02_RS09055	1952033..1952188	+	156	WP_000813263.1	type I toxin-antitoxin system toxin HokD	Toxin
FEL02_RS09060	1952356..1952634	+	279	WP_001341388.1	hypothetical protein	-
FEL02_RS09065	1952636..1953685	+	1050	WP_001265172.1	DUF968 domain-containing protein	-
FEL02_RS09070	1953698..1954069	+	372	WP_001217436.1	RusA family crossover junction endodeoxyribonuclease	-
FEL02_RS09075	1954059..1954430	+	372	WP_000090264.1	antitermination protein	-
FEL02_RS09080	1954582..1955400	+	819	WP_000265265.1	CPBP family intramembrane metalloprotease	-
FEL02_RS09085	1955687..1955883	+	197	Protein_1763	TrmB family transcriptional regulator	-
FEL02_RS09090	1956021..1956734	+	714	WP_000261909.1	helix-turn-helix domain-containing protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Hok/gef cell toxic protein (6-47)

Sequences

Toxin

Protein

• Length: 52 a.a.
• Molecular weight: 5722.86 Da
• Isoelectric Point: 6.1531

>T125447 WP_000813263.1 NZ_CP040313:1952033-1952188 [Escherichia coli]
MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRVRTGQTEVAVFTAYEPEE

Nucleotide

• Length: 156 bp

>T125447 NZ_CP040313:1952033-1952188 [Escherichia coli]
ATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATAGTGACGGCACTGGTAACGAGGAA
AGACCTCTGCGAGGTACGAGTCCGAACCGGCCAGACGGAGGTCGCTGTCTTCACAGCTTACGAACCTGAGGAGTAA

Antitoxin

Nucleotide

• Length: 59 bp

>AT125447 NZ_CP040313:c1952021-1951963 [Escherichia coli]
CCTTGCCTTTCGGCACGTAAGAGGCTAACCTAGATTTGCCGTTCATAGATTGAGCCTCA

Structures

Antitoxin