Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2798957..2799109 | Replicon | chromosome |
| Accession | NZ_CP040256 | ||
| Organism | Enterobacter ludwigii strain JP6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2798971..2799074 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2798957..2799109 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ELJP6_RS13185 | 2795231..2796673 | + | 1443 | WP_138013969.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ELJP6_RS13190 | 2796779..2797018 | + | 240 | WP_020883412.1 | YebV family protein | - |
| ELJP6_RS13195 | 2797053..2797697 | - | 645 | WP_050736985.1 | protein-serine/threonine phosphatase | - |
| ELJP6_RS13200 | 2797865..2798806 | + | 942 | WP_020883410.1 | VirK/YbjX family protein | - |
| - | 2798957..2799109 | + | 153 | - | - | Antitoxin |
| - | 2798971..2799074 | - | 104 | - | - | Toxin |
| ELJP6_RS13205 | 2799213..2799551 | - | 339 | WP_014170622.1 | YebY family protein | - |
| ELJP6_RS13210 | 2799568..2800437 | - | 870 | WP_063156568.1 | copper homeostasis membrane protein CopD | - |
| ELJP6_RS13215 | 2800439..2800811 | - | 373 | Protein_2566 | CopC domain-containing protein YobA | - |
| ELJP6_RS13220 | 2800949..2801179 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| ELJP6_RS13225 | 2801289..2801939 | + | 651 | WP_020883406.1 | carbon-nitrogen hydrolase family protein | - |
| ELJP6_RS13230 | 2801964..2802626 | + | 663 | WP_014170626.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T125201 NZ_CP040256:c2799074-2798971 [Enterobacter ludwigii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 153 bp
>AT125201 NZ_CP040256:2798957-2799109 [Enterobacter ludwigii]
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
