Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2085910..2086076 | Replicon | chromosome |
| Accession | NZ_CP040183 | ||
| Organism | Raoultella planticola strain Rp_CZ180511 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2085968..2086071 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2085910..2086076 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FDZ05_RS09910 | 2081048..2083108 | + | 2061 | WP_099972954.1 | oligopeptidase B | - |
| FDZ05_RS09915 | 2083114..2083773 | - | 660 | WP_032686937.1 | exodeoxyribonuclease X | - |
| FDZ05_RS09920 | 2083852..2084082 | - | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| FDZ05_RS09925 | 2084209..2084583 | + | 375 | WP_032695279.1 | CopC domain-containing protein YobA | - |
| FDZ05_RS09930 | 2084587..2085456 | + | 870 | WP_032686939.1 | copper homeostasis membrane protein CopD | - |
| FDZ05_RS09935 | 2085473..2085811 | + | 339 | WP_032686940.1 | YebY family protein | - |
| - | 2085910..2086076 | - | 167 | - | - | Antitoxin |
| - | 2085968..2086071 | + | 104 | - | - | Toxin |
| FDZ05_RS09940 | 2086391..2086534 | - | 144 | WP_142131748.1 | Ecr family regulatory small membrane protein | - |
| FDZ05_RS09945 | 2086652..2087623 | - | 972 | WP_180889110.1 | VirK/YbjX family protein | - |
| FDZ05_RS09950 | 2087766..2088410 | + | 645 | WP_142630709.1 | protein-serine/threonine phosphatase | - |
| FDZ05_RS09955 | 2088416..2088607 | - | 192 | WP_032686984.1 | YebW family protein | - |
| FDZ05_RS09960 | 2088701..2088940 | - | 240 | WP_004863958.1 | YebV family protein | - |
| FDZ05_RS09965 | 2089055..2090488 | - | 1434 | WP_142630708.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T125079 NZ_CP040183:2085968-2086071 [Raoultella planticola]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT125079 NZ_CP040183:c2086076-2085910 [Raoultella planticola]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
