Detailed information of TA system TA124515

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-Phd
• Location: 27277..27962
• Replicon: plasmid pAtCFBP7129a
• Accession: NZ_CP039924
• Organism: Agrobacterium tumefaciens strain CFBP7129

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: -
• Locus tag: CFBP7129_RS25785
• Protein ID: WP_137006011.1
• Coordinates: 27277..27699 (-)
• Length: 141 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: -
• Locus tag: CFBP7129_RS25790
• Protein ID: WP_137006012.1
• Coordinates: 27696..27962 (-)
• Length: 89 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
CFBP7129_RS25750	22660..23097	+	438	WP_137006006.1	GNAT family N-acetyltransferase	-
CFBP7129_RS25755	23100..23810	+	711	WP_137006007.1	aquaporin family protein	-
CFBP7129_RS25760	23807..24235	+	429	WP_175422247.1	arsenate reductase (glutaredoxin)	-
CFBP7129_RS25765	24210..24935	+	726	WP_175422248.1	arsenical resistance protein ArsH	-
CFBP7129_RS25770	24932..26158	+	1227	WP_137006009.1	arsenite efflux MFS transporter ArsK	-
CFBP7129_RS31705	26595..27239	-	645	WP_175422249.1	hypothetical protein	-
CFBP7129_RS25785	27277..27699	-	423	WP_137006011.1	type II toxin-antitoxin system VapC family toxin	Toxin
CFBP7129_RS25790	27696..27962	-	267	WP_137006012.1	type II toxin-antitoxin system Phd/YefM family antitoxin	Antitoxin
CFBP7129_RS25795	28084..28266	-	183	WP_175422250.1	hypothetical protein	-
CFBP7129_RS25800	28275..29417	-	1143	WP_175422251.1	site-specific integrase	-
CFBP7129_RS25805	29609..30769	+	1161	WP_137006014.1	DUF1612 and helix-turn-helix domain-containing protein	-
CFBP7129_RS25810	31110..31526	+	417	WP_137006015.1	DUF4238 domain-containing protein	-
CFBP7129_RS25815	31533..32093	+	561	WP_137006016.1	hypothetical protein	-
CFBP7129_RS25820	32205..32600	-	396	Protein_40	DUF4158 domain-containing protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Non-Mobilizable plasmid	-	-	1..473557	473557

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Protein of unknown function DUF1474 (1-98)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 141 a.a.
• Molecular weight: 20769.92 Da
• Isoelectric Point: 5.5500

>T124515 WP_137006011.1 NZ_CP039924:c27699-27277 [Agrobacterium tumefaciens]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF

Nucleotide

• Length: 423 bp

>T124515 NZ_CP039924:c27699-27277 [Agrobacterium tumefaciens]
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Antitoxin

Protein

• Length: 89 a.a.
• Molecular weight: 13116.73 Da
• Isoelectric Point: 5.5500

>AT124515 WP_137006012.1 NZ_CP039924:c27962-27696 [Agrobacterium tumefaciens]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFF

Nucleotide

• Length: 267 bp

>AT124515 NZ_CP039924:c27962-27696 [Agrobacterium tumefaciens]
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