Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) ldrD-rdlD/Ldr(toxin)
Location 71532..71752 Replicon chromosome
Accession NZ_CP037943
Organism Escherichia coli strain CFSAN027343

Toxin (Protein)


Gene name ldrD Uniprot ID S1PGT3
Locus tag EKI57_RS00370 Protein ID WP_000170954.1
Coordinates 71532..71639 (-) Length 36 a.a.

Antitoxin (RNA)


Gene name rdlD
Locus tag -
Coordinates 71689..71752 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EKI57_RS00345 67376..68458 + 1083 WP_000804726.1 peptide chain release factor 1 -
EKI57_RS00350 68458..69291 + 834 WP_000456467.1 peptide chain release factor N(5)-glutamine methyltransferase -
EKI57_RS00355 69288..69680 + 393 WP_000200378.1 invasion regulator SirB2 -
EKI57_RS00360 69684..70493 + 810 WP_001257045.1 invasion regulator SirB1 -
EKI57_RS00365 70529..71383 + 855 WP_000811065.1 3-deoxy-8-phosphooctulonate synthase -
EKI57_RS00370 71532..71639 - 108 WP_000170954.1 type I toxin-antitoxin system toxin Ldr family protein Toxin
- 71689..71752 + 64 NuclAT_31 - Antitoxin
- 71689..71752 + 64 NuclAT_31 - Antitoxin
- 71689..71752 + 64 NuclAT_31 - Antitoxin
- 71689..71752 + 64 NuclAT_31 - Antitoxin
- 71689..71752 + 64 NuclAT_34 - Antitoxin
- 71689..71752 + 64 NuclAT_34 - Antitoxin
- 71689..71752 + 64 NuclAT_34 - Antitoxin
- 71689..71752 + 64 NuclAT_34 - Antitoxin
- 71689..71752 + 64 NuclAT_37 - Antitoxin
- 71689..71752 + 64 NuclAT_37 - Antitoxin
- 71689..71752 + 64 NuclAT_37 - Antitoxin
- 71689..71752 + 64 NuclAT_37 - Antitoxin
- 71689..71752 + 64 NuclAT_40 - Antitoxin
- 71689..71752 + 64 NuclAT_40 - Antitoxin
- 71689..71752 + 64 NuclAT_40 - Antitoxin
- 71689..71752 + 64 NuclAT_40 - Antitoxin
- 71689..71752 + 64 NuclAT_43 - Antitoxin
- 71689..71752 + 64 NuclAT_43 - Antitoxin
- 71689..71752 + 64 NuclAT_43 - Antitoxin
- 71689..71752 + 64 NuclAT_43 - Antitoxin
- 71689..71752 + 64 NuclAT_46 - Antitoxin
- 71689..71752 + 64 NuclAT_46 - Antitoxin
- 71689..71752 + 64 NuclAT_46 - Antitoxin
- 71689..71752 + 64 NuclAT_46 - Antitoxin
EKI57_RS00375 72067..72174 - 108 WP_000170959.1 type I toxin-antitoxin system toxin Ldr family protein -
- 72227..72288 + 62 NuclAT_30 - -
- 72227..72288 + 62 NuclAT_30 - -
- 72227..72288 + 62 NuclAT_30 - -
- 72227..72288 + 62 NuclAT_30 - -
- 72227..72288 + 62 NuclAT_33 - -
- 72227..72288 + 62 NuclAT_33 - -
- 72227..72288 + 62 NuclAT_33 - -
- 72227..72288 + 62 NuclAT_33 - -
- 72227..72288 + 62 NuclAT_36 - -
- 72227..72288 + 62 NuclAT_36 - -
- 72227..72288 + 62 NuclAT_36 - -
- 72227..72288 + 62 NuclAT_36 - -
- 72227..72288 + 62 NuclAT_39 - -
- 72227..72288 + 62 NuclAT_39 - -
- 72227..72288 + 62 NuclAT_39 - -
- 72227..72288 + 62 NuclAT_39 - -
- 72227..72288 + 62 NuclAT_42 - -
- 72227..72288 + 62 NuclAT_42 - -
- 72227..72288 + 62 NuclAT_42 - -
- 72227..72288 + 62 NuclAT_42 - -
- 72227..72288 + 62 NuclAT_45 - -
- 72227..72288 + 62 NuclAT_45 - -
- 72227..72288 + 62 NuclAT_45 - -
- 72227..72288 + 62 NuclAT_45 - -
- 72227..72290 + 64 NuclAT_16 - -
- 72227..72290 + 64 NuclAT_16 - -
- 72227..72290 + 64 NuclAT_16 - -
- 72227..72290 + 64 NuclAT_16 - -
- 72227..72290 + 64 NuclAT_18 - -
- 72227..72290 + 64 NuclAT_18 - -
- 72227..72290 + 64 NuclAT_18 - -
- 72227..72290 + 64 NuclAT_18 - -
- 72227..72290 + 64 NuclAT_20 - -
- 72227..72290 + 64 NuclAT_20 - -
- 72227..72290 + 64 NuclAT_20 - -
- 72227..72290 + 64 NuclAT_20 - -
- 72227..72290 + 64 NuclAT_22 - -
- 72227..72290 + 64 NuclAT_22 - -
- 72227..72290 + 64 NuclAT_22 - -
- 72227..72290 + 64 NuclAT_22 - -
- 72227..72290 + 64 NuclAT_24 - -
- 72227..72290 + 64 NuclAT_24 - -
- 72227..72290 + 64 NuclAT_24 - -
- 72227..72290 + 64 NuclAT_24 - -
- 72227..72290 + 64 NuclAT_26 - -
- 72227..72290 + 64 NuclAT_26 - -
- 72227..72290 + 64 NuclAT_26 - -
- 72227..72290 + 64 NuclAT_26 - -
EKI57_RS00380 72603..72710 - 108 WP_000170955.1 small toxic polypeptide LdrA/LdrC -
- 72758..72823 + 66 NuclAT_29 - -
- 72758..72823 + 66 NuclAT_29 - -
- 72758..72823 + 66 NuclAT_29 - -
- 72758..72823 + 66 NuclAT_29 - -
- 72758..72823 + 66 NuclAT_32 - -
- 72758..72823 + 66 NuclAT_32 - -
- 72758..72823 + 66 NuclAT_32 - -
- 72758..72823 + 66 NuclAT_32 - -
- 72758..72823 + 66 NuclAT_35 - -
- 72758..72823 + 66 NuclAT_35 - -
- 72758..72823 + 66 NuclAT_35 - -
- 72758..72823 + 66 NuclAT_35 - -
- 72758..72823 + 66 NuclAT_38 - -
- 72758..72823 + 66 NuclAT_38 - -
- 72758..72823 + 66 NuclAT_38 - -
- 72758..72823 + 66 NuclAT_38 - -
- 72758..72823 + 66 NuclAT_41 - -
- 72758..72823 + 66 NuclAT_41 - -
- 72758..72823 + 66 NuclAT_41 - -
- 72758..72823 + 66 NuclAT_41 - -
- 72758..72823 + 66 NuclAT_44 - -
- 72758..72823 + 66 NuclAT_44 - -
- 72758..72823 + 66 NuclAT_44 - -
- 72758..72823 + 66 NuclAT_44 - -
- 72758..72825 + 68 NuclAT_15 - -
- 72758..72825 + 68 NuclAT_15 - -
- 72758..72825 + 68 NuclAT_15 - -
- 72758..72825 + 68 NuclAT_15 - -
- 72758..72825 + 68 NuclAT_17 - -
- 72758..72825 + 68 NuclAT_17 - -
- 72758..72825 + 68 NuclAT_17 - -
- 72758..72825 + 68 NuclAT_17 - -
- 72758..72825 + 68 NuclAT_19 - -
- 72758..72825 + 68 NuclAT_19 - -
- 72758..72825 + 68 NuclAT_19 - -
- 72758..72825 + 68 NuclAT_19 - -
- 72758..72825 + 68 NuclAT_21 - -
- 72758..72825 + 68 NuclAT_21 - -
- 72758..72825 + 68 NuclAT_21 - -
- 72758..72825 + 68 NuclAT_21 - -
- 72758..72825 + 68 NuclAT_23 - -
- 72758..72825 + 68 NuclAT_23 - -
- 72758..72825 + 68 NuclAT_23 - -
- 72758..72825 + 68 NuclAT_23 - -
- 72758..72825 + 68 NuclAT_25 - -
- 72758..72825 + 68 NuclAT_25 - -
- 72758..72825 + 68 NuclAT_25 - -
- 72758..72825 + 68 NuclAT_25 - -
EKI57_RS00385 73115..74215 - 1101 WP_001295620.1 sodium-potassium/proton antiporter ChaA -
EKI57_RS00390 74485..74715 + 231 WP_001146442.1 putative cation transport regulator ChaB -
EKI57_RS00395 74873..75568 + 696 WP_001297117.1 glutathione-specific gamma-glutamylcyclotransferase -
EKI57_RS00400 75612..75965 - 354 WP_001169669.1 DsrE/F sulfur relay family protein YchN -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Type I toxin-antitoxin system, toxin Ldr

(1-35)


Sequences

Toxin        


Download         Length: 36 a.a.        Molecular weight: 3983.80 Da        Isoelectric Point: 11.4779

>T120463 WP_000170954.1 NZ_CP037943:c71639-71532 [Escherichia coli]
MTLAQFAMIFWHDLAAPILAGIITAAIVGWWRNRK

Download         Length: 108 bp

>T120463 NZ_CP037943:c71639-71532 [Escherichia coli]
ATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTATTACCGCAGCGAT
TGTCGGCTGGTGGCGTAACCGGAAGTAA

Antitoxin


Download         Length: 64 bp

>AT120463 NZ_CP037943:71689-71752 [Escherichia coli]
TCTGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTAAACCTCTCAACGTGCGGGGGTTTTCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U9LPE9

Antitoxin

Download structure file

References