Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/RHH(antitoxin)
Location 143370..143875 Replicon chromosome
Accession NZ_CP037926
Organism Pseudomonas aeruginosa strain AES1R

Toxin (Protein)


Gene name parE Uniprot ID V6A7K8
Locus tag CKAES1R_RS00650 Protein ID WP_003083773.1
Coordinates 143370..143651 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID Q9I707
Locus tag CKAES1R_RS00655 Protein ID WP_003112628.1
Coordinates 143648..143875 (-) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CKAES1R_RS00625 138621..139970 + 1350 WP_003142411.1 C4-dicarboxylate transporter DctA -
CKAES1R_RS00630 140019..140705 + 687 WP_003083762.1 FadR family transcriptional regulator -
CKAES1R_RS00635 140806..141540 + 735 WP_003115036.1 GntR family transcriptional regulator -
CKAES1R_RS00640 141744..142130 + 387 WP_014602345.1 aegerolysin family protein -
CKAES1R_RS00645 142162..143070 - 909 WP_003083769.1 LysR family transcriptional regulator -
CKAES1R_RS00650 143370..143651 - 282 WP_003083773.1 type II toxin-antitoxin system toxin ParE Toxin
CKAES1R_RS00655 143648..143875 - 228 WP_003112628.1 CopG family ribbon-helix-helix protein Antitoxin
CKAES1R_RS00660 144051..144671 - 621 WP_003101226.1 hypothetical protein -
CKAES1R_RS00665 144772..145272 + 501 WP_003101228.1 LEA type 2 family protein -
CKAES1R_RS00670 145345..145686 + 342 WP_003101229.1 alkylphosphonate utilization protein -
CKAES1R_RS00675 145768..147194 - 1427 Protein_134 GABA permease -
CKAES1R_RS00680 147363..148856 - 1494 WP_019681361.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-87)

Antitoxin

Ribbon-helix-helix protein, CopG

(5-42)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10462.19 Da        Isoelectric Point: 10.0435

>T120391 WP_003083773.1 NZ_CP037926:c143651-143370 [Pseudomonas aeruginosa]
MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQQVANQGAGRPSEVPGVRTLTLERWPFSAPFRVKGKE
IQILRIDRVEITP

Download         Length: 282 bp

>T120391 NZ_CP037926:c143651-143370 [Pseudomonas aeruginosa]
ATGAGCCTGAAGTGGACCCGCAAGGCGGCCGCCGACCTGGACGCCATCTACGACCATTACGTCGTGCTGATCGGCCCGGA
AAAAGCTCTGAAAGCCGTTCAGGACATCGTCGAGCAGGTGAAACCGCTGCAGCAGGTAGCCAACCAGGGGGCAGGGCGGC
CCAGCGAGGTGCCAGGCGTACGCACCCTGACCCTGGAGCGCTGGCCGTTCAGCGCCCCGTTTCGGGTTAAAGGCAAGGAA
ATCCAGATTTTGCGCATCGACAGAGTCGAAATTACCCCCTGA

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8568.64 Da        Isoelectric Point: 5.5740

>AT120391 WP_003112628.1 NZ_CP037926:c143875-143648 [Pseudomonas aeruginosa]
MSTVVSFRADDALVAALDELARATHRDRPYHLRQALAQYLERQQWQVAAIDEGLADANAGRLLEHIEIEKRWGLQ

Download         Length: 228 bp

>AT120391 NZ_CP037926:c143875-143648 [Pseudomonas aeruginosa]
ATGAGCACCGTAGTCTCGTTCCGCGCCGATGACGCCCTGGTCGCGGCCCTCGACGAACTGGCCCGCGCCACCCACCGCGA
CCGCCCCTACCACCTGCGGCAGGCGCTCGCGCAGTACCTGGAAAGGCAGCAGTGGCAGGTCGCTGCCATCGATGAAGGCT
TGGCCGATGCCAATGCCGGTCGCCTGCTGGAACACATCGAGATCGAGAAGCGCTGGGGGCTGCAATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6XRW

Antitoxin

Source ID Structure
PDB 6XRW
AlphaFold DB Q9I707

References