Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1957342..1957613 | Replicon | chromosome |
| Accession | NZ_CP037910 | ||
| Organism | Escherichia coli strain YSP8-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1957472..1957575 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1957342..1957613 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E1J56_RS09360 | 1953897..1954559 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| E1J56_RS09365 | 1954583..1955239 | - | 657 | WP_001752600.1 | carbon-nitrogen hydrolase family protein | - |
| E1J56_RS09370 | 1955341..1955571 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| E1J56_RS09375 | 1955710..1956084 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| E1J56_RS09380 | 1956088..1956960 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| E1J56_RS09385 | 1956973..1957314 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1957342..1957613 | - | 272 | - | - | Antitoxin |
| - | 1957472..1957575 | + | 104 | - | - | Toxin |
| E1J56_RS09390 | 1957710..1958366 | + | 657 | WP_001752599.1 | protein-serine/threonine phosphatase | - |
| E1J56_RS09395 | 1958367..1958558 | - | 192 | WP_001338167.1 | YebW family protein | - |
| E1J56_RS09400 | 1958663..1958899 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| E1J56_RS09405 | 1959017..1960456 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T120317 NZ_CP037910:1957472-1957575 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT120317 NZ_CP037910:c1957613-1957342 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
