Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3670633..3670778 | Replicon | chromosome |
| Accession | NZ_CP036450 | ||
| Organism | Klebsiella pneumoniae strain KPNIH45 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3670640..3670742 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3670633..3670778 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3377_RS19980 | 3666165..3667598 | + | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C3377_RS19985 | 3667714..3667953 | + | 240 | WP_002911393.1 | YebV family protein | - |
| C3377_RS19990 | 3668051..3668242 | + | 192 | WP_002911395.1 | YebW family protein | - |
| C3377_RS19995 | 3668239..3668892 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| C3377_RS20000 | 3669049..3670017 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| C3377_RS28560 | 3670122..3670265 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3670633..3670778 | + | 146 | - | - | Antitoxin |
| - | 3670640..3670742 | - | 103 | - | - | Toxin |
| C3377_RS20010 | 3670901..3671239 | - | 339 | WP_016529031.1 | YebY family protein | - |
| C3377_RS20015 | 3671256..3672125 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| C3377_RS20020 | 3672129..3672503 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| C3377_RS20025 | 3672616..3672846 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| C3377_RS20030 | 3672925..3673584 | + | 660 | WP_032425085.1 | exodeoxyribonuclease X | - |
| C3377_RS20035 | 3673588..3675648 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T119828 NZ_CP036450:c3670742-3670640 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT119828 NZ_CP036450:3670633-3670778 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
