Detailed information of TA system TA119536

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): pasABC/RelE-HTH
• Location: 1698..2172
• Replicon: plasmid p3_020098
• Accession: NZ_CP036309
• Organism: Klebsiella pneumoniae strain WCHKP020098

Toxin (Protein)

• Gene name: pasB
• Uniprot ID: A0A8J3DT22
• Locus tag: C6M05_RS30015
• Protein ID: WP_004197762.1
• Coordinates: 1906..2172 (+)
• Length: 89 a.a.

Antitoxin (Protein)

• Gene name: pasA
• Uniprot ID: S1EJF5
• Locus tag: C6M05_RS30010
• Protein ID: WP_000879771.1
• Coordinates: 1698..1922 (+)
• Length: 75 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
C6M05_RS31350	303..812	+	510	WP_032433972.1	MbeB family mobilization protein	-
C6M05_RS31355	819..1031	+	213	WP_021527181.1	MbeD family mobilization/exclusion protein	-
C6M05_RS30010	1698..1922	+	225	WP_000879771.1	TraY domain-containing protein	Antitoxin
C6M05_RS30015	1906..2172	+	267	WP_004197762.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
C6M05_RS30020	2242..2592	-	351	WP_004197756.1	hypothetical protein	-
C6M05_RS30025	2658..3203	-	546	WP_023317533.1	hypothetical protein	-
C6M05_RS30030	3229..3608	-	380	Protein_6	hypothetical protein	-
C6M05_RS31360	4711..4887	+	177	WP_004197757.1	hypothetical protein	-
C6M05_RS30040	4877..5221	+	345	WP_062955149.1	MobC family plasmid mobilization relaxosome protein	-
C6M05_RS31365	5160..5588	+	429	Protein_9	relaxase/mobilization nuclease domain-containing protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Mobilizable plasmid	-	-	1..5596	5596

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (5-87)

Antitoxin

• Relaxosome protein TraY (4-45)

Sequences

Toxin

Protein

• Length: 89 a.a.
• Molecular weight: 10342.96 Da
• Isoelectric Point: 9.8727

>T119536 WP_004197762.1 NZ_CP036309:1906-2172 [Klebsiella pneumoniae]
MVWTINYSDRALKSLRKMDKQNARRIVDFMSLRIAVAADPRQSGKPLKGELGEFWRYRVGDYRVLCEIRDDELVILAATI
GHRREVYD

Nucleotide

• Length: 267 bp

>T119536 NZ_CP036309:1906-2172 [Klebsiella pneumoniae]
TTGGTCTGGACGATTAACTATTCCGATCGGGCGCTCAAATCGTTACGCAAGATGGACAAACAGAACGCACGACGGATTGT
GGATTTTATGAGTTTACGCATTGCAGTTGCTGCCGATCCTCGCCAGTCAGGGAAGCCGCTCAAAGGTGAGCTGGGCGAGT
TCTGGCGCTATCGGGTGGGAGATTATCGCGTTCTGTGTGAGATCCGAGATGACGAGCTTGTTATCCTTGCCGCCACGATT
GGACATCGCCGCGAAGTTTACGACTGA

Antitoxin

Protein

• Length: 75 a.a.
• Molecular weight: 8369.28 Da
• Isoelectric Point: 4.6533

>AT119536 WP_000879771.1 NZ_CP036309:1698-1922 [Klebsiella pneumoniae]
MLAIRLSDEIESRLDSLAKQTGRTKTFYAREAILAHLEDLEDYYLSAETAARVRRGDEAVHSSEDVRKSLGLDD

Nucleotide

• Length: 225 bp

>AT119536 NZ_CP036309:1698-1922 [Klebsiella pneumoniae]
ATGCTTGCTATCCGGTTATCTGATGAGATTGAGTCCCGTCTGGACTCGCTGGCGAAGCAAACCGGCAGAACAAAGACGTT
TTATGCGCGGGAAGCAATACTGGCGCATCTGGAAGACCTGGAGGATTATTATCTTTCAGCAGAAACTGCTGCACGCGTTC
GCCGTGGTGATGAAGCAGTGCATTCGTCTGAAGACGTGAGGAAGTCACTTGGTCTGGACGATTAA

Structures

Antitoxin

• AlphaFold DB: S1EJF5