Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2410765..2411036 | Replicon | chromosome |
| Accession | NZ_CP035874 | ||
| Organism | Escherichia coli strain B2C | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2410895..2410998 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2410765..2411036 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EW998_RS11545 | 2407320..2407982 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| EW998_RS11550 | 2408006..2408662 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| EW998_RS11555 | 2408764..2408994 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EW998_RS11560 | 2409133..2409507 | + | 375 | WP_000168746.1 | CopC domain-containing protein YobA | - |
| EW998_RS11565 | 2409511..2410383 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| EW998_RS11570 | 2410396..2410737 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2410765..2411036 | - | 272 | - | - | Antitoxin |
| - | 2410895..2410998 | + | 104 | - | - | Toxin |
| EW998_RS11575 | 2411133..2411789 | + | 657 | WP_000812772.1 | protein-serine/threonine phosphatase | - |
| EW998_RS11580 | 2411790..2411981 | - | 192 | WP_001338167.1 | YebW family protein | - |
| EW998_RS11585 | 2412086..2412322 | - | 237 | WP_001338166.1 | YebV family protein | - |
| EW998_RS11590 | 2412440..2413879 | - | 1440 | WP_001397399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T118942 NZ_CP035874:2410895-2410998 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT118942 NZ_CP035874:c2411036-2410765 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
