Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1491718..1491989 | Replicon | chromosome |
| Accession | NZ_CP035855 | ||
| Organism | Escherichia coli TW11681 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1491756..1491859 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1491718..1491989 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXE31_RS07410 | 1488875..1490314 | + | 1440 | WP_001383086.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EXE31_RS07415 | 1490432..1490668 | + | 237 | WP_001295499.1 | YebV family protein | - |
| EXE31_RS07420 | 1490773..1490964 | + | 192 | WP_001313035.1 | YebW family protein | - |
| EXE31_RS07425 | 1490965..1491621 | - | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| - | 1491718..1491989 | + | 272 | - | - | Antitoxin |
| - | 1491756..1491859 | - | 104 | - | - | Toxin |
| EXE31_RS07430 | 1492017..1492358 | - | 342 | WP_000976472.1 | YebY family protein | - |
| EXE31_RS07435 | 1492371..1493243 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| EXE31_RS07440 | 1493247..1493621 | - | 375 | WP_000168736.1 | CopC domain-containing protein YobA | - |
| EXE31_RS07445 | 1493760..1493990 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EXE31_RS07450 | 1494092..1494748 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| EXE31_RS07455 | 1494772..1495434 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T118827 NZ_CP035855:c1491859-1491756 [Escherichia coli TW11681]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT118827 NZ_CP035855:1491718-1491989 [Escherichia coli TW11681]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
