Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicAB/-
Location 1612618..1613204 Replicon chromosome
Accession NZ_CP035850
Organism Escherichia coli strain TW10590

Toxin (Protein)


Gene name hicA Uniprot ID A0A0H0RQZ4
Locus tag EXE32_RS07530 Protein ID WP_042014162.1
Coordinates 1612618..1612848 (+) Length 77 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID U9Y7E1
Locus tag EXE32_RS07535 Protein ID WP_000593555.1
Coordinates 1612845..1613204 (+) Length 120 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EXE32_RS07520 (1608655) 1608655..1611390 + 2736 WP_000149132.1 ribosome-associated ATPase/putative transporter RbbA -
EXE32_RS07525 (1611390) 1611390..1612514 + 1125 WP_001314210.1 ABC transporter permease -
EXE32_RS07530 (1612618) 1612618..1612848 + 231 WP_042014162.1 type II toxin-antitoxin system HicA family toxin Toxin
EXE32_RS07535 (1612845) 1612845..1613204 + 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin Antitoxin
EXE32_RS07540 (1613324) 1613324..1613725 - 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
EXE32_RS07545 (1613731) 1613731..1614537 - 807 WP_000173666.1 nickel import ATP-binding protein NikE -
EXE32_RS07550 (1614534) 1614534..1615298 - 765 WP_001136236.1 nickel import ATP-binding protein NikD -
EXE32_RS07555 (1615298) 1615298..1616131 - 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
EXE32_RS07560 (1616128) 1616128..1617072 - 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(15-65)

Antitoxin

Uncharacterised protein family HicB

(60-112)


Sequences

Toxin        


Download         Length: 77 a.a.        Molecular weight: 8419.79 Da        Isoelectric Point: 8.5518

>T118797 WP_042014162.1 NZ_CP035850:1612618-1612848 [Escherichia coli]
MDQLFKSPLPQGIKWTDIESLVKALGGEIKEGRGSRCKFILNMSVACFHRPHPSPDTDKGAVESVRDWLLSIGVKP

Download         Length: 231 bp

>T118797 NZ_CP035850:1612618-1612848 [Escherichia coli]
CTGGATCAGCTATTTAAATCACCTTTACCTCAAGGAATCAAATGGACTGATATAGAATCTCTGGTTAAAGCGTTAGGCGG
AGAAATTAAGGAAGGTAGGGGGTCGCGCTGTAAGTTCATACTAAATATGAGCGTTGCGTGTTTCCATCGGCCTCATCCGT
CGCCAGATACCGATAAAGGCGCTGTAGAAAGCGTGCGTGACTGGTTACTAAGTATAGGGGTAAAACCATGA

Antitoxin


Download         Length: 120 a.a.        Molecular weight: 13402.27 Da        Isoelectric Point: 5.1987

>AT118797 WP_000593555.1 NZ_CP035850:1612845-1613204 [Escherichia coli]
MIKLKTPNSMEIAGQPAVITYVPELNAFRGKFLGLSGYCDFVSDSIQGLQKEGELSLREYLEDCKAAGIEPYARTEKIKT
FTLRYPESLSERLNNAAAQQQVSVNTYIIETLNERLNHL

Download         Length: 360 bp

>AT118797 NZ_CP035850:1612845-1613204 [Escherichia coli]
ATGATCAAACTGAAGACGCCAAACTCTATGGAGATTGCCGGGCAACCTGCTGTTATCACTTACGTGCCAGAACTGAATGC
ATTTCGTGGCAAATTCCTGGGCTTGTCAGGTTATTGTGATTTTGTCTCTGACAGCATTCAGGGGCTGCAAAAAGAAGGGG
AACTTTCCCTGCGAGAGTATCTTGAGGATTGTAAAGCTGCGGGTATTGAGCCGTATGCGCGTACAGAAAAGATTAAGACC
TTTACGTTACGCTATCCAGAATCGCTGAGTGAACGCCTTAATAATGCGGCTGCGCAGCAACAAGTCTCTGTTAATACCTA
TATTATTGAAACACTGAATGAGCGTTTGAATCATTTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H0RQZ4

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9LKZ6

References