Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2239773..2240044 | Replicon | chromosome |
| Accession | NZ_CP035832 | ||
| Organism | Escherichia coli strain 025542-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2239903..2240006 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2239773..2240044 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXA04_RS10965 | 2236328..2236990 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EXA04_RS10970 | 2237014..2237670 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| EXA04_RS10975 | 2237772..2238002 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EXA04_RS10980 | 2238141..2238515 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EXA04_RS10985 | 2238519..2239391 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| EXA04_RS10990 | 2239404..2239745 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2239773..2240044 | - | 272 | - | - | Antitoxin |
| - | 2239903..2240006 | + | 104 | - | - | Toxin |
| EXA04_RS10995 | 2240141..2240797 | + | 657 | WP_000812723.1 | protein-serine/threonine phosphatase | - |
| EXA04_RS11000 | 2240798..2240989 | - | 192 | WP_001338167.1 | YebW family protein | - |
| EXA04_RS11005 | 2241094..2241330 | - | 237 | WP_001295499.1 | YebV family protein | - |
| EXA04_RS11010 | 2241448..2242887 | - | 1440 | WP_001352399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2168356..2255884 | 87528 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T118683 NZ_CP035832:2239903-2240006 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTTCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTTCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT118683 NZ_CP035832:c2240044-2239773 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGAAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGAAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
