Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2402612..2402883 | Replicon | chromosome |
| Accession | NZ_CP035817 | ||
| Organism | Escherichia coli strain E7476 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2402742..2402845 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2402612..2402883 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXA08_RS11775 | 2399167..2399829 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EXA08_RS11780 | 2399853..2400509 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| EXA08_RS11785 | 2400611..2400841 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EXA08_RS11790 | 2400980..2401354 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| EXA08_RS11795 | 2401358..2402230 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| EXA08_RS11800 | 2402243..2402584 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2402612..2402883 | - | 272 | - | - | Antitoxin |
| - | 2402742..2402845 | + | 104 | - | - | Toxin |
| EXA08_RS11805 | 2402980..2403636 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| EXA08_RS11810 | 2403637..2403828 | - | 192 | WP_001296140.1 | YebW family protein | - |
| EXA08_RS11815 | 2403933..2404169 | - | 237 | WP_001295499.1 | YebV family protein | - |
| EXA08_RS11820 | 2404287..2405726 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T118576 NZ_CP035817:2402742-2402845 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT118576 NZ_CP035817:c2402883-2402612 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
