Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2488661..2488932 | Replicon | chromosome |
| Accession | NZ_CP035751 | ||
| Organism | Escherichia coli E110019 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2488699..2488802 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2488661..2488932 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECE110019_RS12310 | 2485818..2487257 | + | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECE110019_RS12315 | 2487375..2487611 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECE110019_RS12320 | 2487716..2487907 | + | 192 | WP_001296140.1 | YebW family protein | - |
| ECE110019_RS12325 | 2487908..2488564 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 2488661..2488932 | + | 272 | - | - | Antitoxin |
| - | 2488699..2488802 | - | 104 | - | - | Toxin |
| ECE110019_RS12330 | 2488960..2489301 | - | 342 | WP_000976472.1 | YebY family protein | - |
| ECE110019_RS12335 | 2489314..2490186 | - | 873 | WP_000879305.1 | copper homeostasis membrane protein CopD | - |
| ECE110019_RS12340 | 2490190..2490564 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ECE110019_RS12345 | 2490703..2490933 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECE110019_RS12350 | 2491035..2491691 | + | 657 | WP_000011668.1 | carbon-nitrogen hydrolase family protein | - |
| ECE110019_RS12355 | 2491715..2492377 | + | 663 | Protein_2429 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T118380 NZ_CP035751:c2488802-2488699 [Escherichia coli E110019]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT118380 NZ_CP035751:2488661-2488932 [Escherichia coli E110019]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
