Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2820060..2820261 | Replicon | chromosome |
| Accession | NZ_CP035385 | ||
| Organism | Enterobacter hormaechei strain S11_16 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2820065..2820168 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2820060..2820261 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EQ802_RS13800 | 2816322..2817770 | + | 1449 | WP_202075837.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EQ802_RS13805 | 2817875..2818114 | + | 240 | WP_006811010.1 | YebV family protein | - |
| EQ802_RS13810 | 2818149..2818793 | - | 645 | WP_063147815.1 | protein-serine/threonine phosphatase | - |
| EQ802_RS13815 | 2818961..2819941 | + | 981 | WP_129008822.1 | VirK/YbjX family protein | - |
| EQ802_RS13820 | 2819987..2820184 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2820060..2820261 | + | 202 | - | - | Antitoxin |
| - | 2820065..2820168 | - | 104 | - | - | Toxin |
| EQ802_RS13825 | 2820310..2820648 | - | 339 | WP_022648464.1 | YebY family protein | - |
| EQ802_RS13830 | 2820665..2821534 | - | 870 | WP_023300432.1 | copper homeostasis membrane protein CopD | - |
| EQ802_RS13835 | 2821536..2821907 | - | 372 | WP_063147813.1 | CopC domain-containing protein YobA | - |
| EQ802_RS13840 | 2822045..2822275 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| EQ802_RS13845 | 2822387..2823025 | + | 639 | WP_045623249.1 | carbon-nitrogen hydrolase family protein | - |
| EQ802_RS13850 | 2823050..2823712 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T117719 NZ_CP035385:c2820168-2820065 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT117719 NZ_CP035385:2820060-2820261 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
