Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1956743..1957014 | Replicon | chromosome |
| Accession | NZ_CP035312 | ||
| Organism | Escherichia coli strain D72 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1956873..1956976 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1956743..1957014 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ERL60_RS09460 | 1953299..1953961 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| ERL60_RS09465 | 1953985..1954641 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| ERL60_RS09470 | 1954743..1954973 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ERL60_RS09475 | 1955112..1955486 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| ERL60_RS09480 | 1955490..1956362 | + | 873 | WP_000879297.1 | copper homeostasis membrane protein CopD | - |
| ERL60_RS09485 | 1956375..1956716 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1956743..1957014 | - | 272 | - | - | Antitoxin |
| - | 1956873..1956976 | + | 104 | - | - | Toxin |
| ERL60_RS09490 | 1957111..1957767 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| ERL60_RS09495 | 1957768..1957959 | - | 192 | WP_001296140.1 | YebW family protein | - |
| ERL60_RS09500 | 1958064..1958300 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ERL60_RS09505 | 1958418..1959857 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T117586 NZ_CP035312:1956873-1956976 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT117586 NZ_CP035312:c1957014-1956743 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
