Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4001808..4001953 | Replicon | chromosome |
| Accession | NZ_CP034819 | ||
| Organism | Salmonella sp. SSDFZ54 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4001848..4001951 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4001808..4001953 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EOS97_RS19775 | 3998234..3998932 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| EOS97_RS19780 | 3998956..3999612 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| EOS97_RS19785 | 3999720..3999950 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| EOS97_RS19790 | 4000088..4000462 | + | 375 | WP_000168396.1 | CopC domain-containing protein YobA | - |
| EOS97_RS19795 | 4000463..4001338 | + | 876 | WP_000979697.1 | copper homeostasis membrane protein CopD | - |
| EOS97_RS19800 | 4001355..4001708 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 4001808..4001953 | - | 146 | - | - | Antitoxin |
| - | 4001848..4001951 | + | 104 | - | - | Toxin |
| EOS97_RS19805 | 4002082..4002429 | - | 348 | Protein_3727 | tyrosine-type recombinase/integrase | - |
| EOS97_RS19810 | 4002444..4002578 | + | 135 | WP_001747902.1 | hypothetical protein | - |
| EOS97_RS19815 | 4002697..4005117 | + | 2421 | WP_024146377.1 | E3 ubiquitin--protein ligase | - |
| EOS97_RS19820 | 4005219..4005760 | + | 542 | Protein_3730 | transposase | - |
| EOS97_RS19825 | 4005906..4006046 | - | 141 | WP_001640444.1 | hypothetical protein | - |
| EOS97_RS19830 | 4006215..4006481 | - | 267 | WP_077906534.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 4005422..4005760 | 338 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T116876 NZ_CP034819:4001848-4001951 [Salmonella sp. SSDFZ54]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT116876 NZ_CP034819:c4001953-4001808 [Salmonella sp. SSDFZ54]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
