Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5254949..5255220 | Replicon | chromosome |
| Accession | NZ_CP034803 | ||
| Organism | Escherichia coli strain 2009C-3554 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5255079..5255182 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5254949..5255220 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A0I22_RS26850 | 5251504..5252166 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| A0I22_RS26855 | 5252190..5252846 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| A0I22_RS26860 | 5252948..5253178 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A0I22_RS26865 | 5253317..5253691 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| A0I22_RS26870 | 5253695..5254567 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| A0I22_RS26875 | 5254580..5254921 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 5254949..5255220 | - | 272 | - | - | Antitoxin |
| - | 5255079..5255182 | + | 104 | - | - | Toxin |
| A0I22_RS26880 | 5255317..5255973 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| A0I22_RS26885 | 5255974..5256165 | - | 192 | WP_001296140.1 | YebW family protein | - |
| A0I22_RS26890 | 5256270..5256506 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| A0I22_RS26895 | 5256624..5258063 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T116778 NZ_CP034803:5255079-5255182 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT116778 NZ_CP034803:c5255220-5254949 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
