Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1103159..1103430 | Replicon | chromosome |
| Accession | NZ_CP034738 | ||
| Organism | Escherichia coli strain L65 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1103197..1103300 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1103159..1103430 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EM854_RS05450 | 1100316..1101755 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EM854_RS05455 | 1101873..1102109 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EM854_RS05460 | 1102214..1102405 | + | 192 | WP_001296140.1 | YebW family protein | - |
| EM854_RS05465 | 1102406..1103062 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1103159..1103430 | + | 272 | - | - | Antitoxin |
| - | 1103197..1103300 | - | 104 | - | - | Toxin |
| EM854_RS05470 | 1103458..1103799 | - | 342 | WP_000976492.1 | YebY family protein | - |
| EM854_RS05475 | 1103812..1104684 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| EM854_RS05480 | 1104688..1105062 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| EM854_RS05485 | 1105201..1105431 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EM854_RS05490 | 1105533..1106189 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EM854_RS05495 | 1106213..1106875 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T116412 NZ_CP034738:c1103300-1103197 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT116412 NZ_CP034738:1103159-1103430 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
