Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/- |
Location | 5570890..5571545 | Replicon | chromosome |
Accession | NZ_CP034725 | ||
Organism | Pseudomonas brassicacearum strain 3Re2-7 |
Toxin (Protein)
Gene name | higB | Uniprot ID | I4K1R5 |
Locus tag | ELZ14_RS25720 | Protein ID | WP_003205392.1 |
Coordinates | 5571201..5571545 (-) | Length | 115 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | - |
Locus tag | ELZ14_RS25715 | Protein ID | WP_003205391.1 |
Coordinates | 5570890..5571204 (-) | Length | 105 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
ELZ14_RS25690 | 5566936..5567853 | + | 918 | WP_003205387.1 | LysR family transcriptional regulator | - |
ELZ14_RS25695 | 5568003..5569016 | + | 1014 | WP_003205388.1 | diguanylate cyclase | - |
ELZ14_RS25700 | 5569108..5569851 | + | 744 | WP_003205389.1 | DUF72 domain-containing protein | - |
ELZ14_RS25705 | 5569973..5570677 | + | 705 | WP_003205390.1 | hypothetical protein | - |
ELZ14_RS25715 | 5570890..5571204 | - | 315 | WP_003205391.1 | helix-turn-helix domain-containing protein | Antitoxin |
ELZ14_RS25720 | 5571201..5571545 | - | 345 | WP_003205392.1 | toxin HigB-2 | Toxin |
ELZ14_RS25725 | 5571685..5572572 | - | 888 | WP_003205393.1 | heme o synthase | - |
ELZ14_RS25730 | 5572584..5572919 | - | 336 | WP_003205394.1 | cytochrome o ubiquinol oxidase subunit IV | - |
ELZ14_RS25735 | 5572920..5573546 | - | 627 | WP_003205395.1 | cytochrome o ubiquinol oxidase subunit III | - |
ELZ14_RS25740 | 5573550..5575580 | - | 2031 | WP_003205396.1 | cytochrome o ubiquinol oxidase subunit I | - |
ELZ14_RS25745 | 5575584..5576531 | - | 948 | WP_003205397.1 | ubiquinol oxidase subunit II | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 115 a.a. Molecular weight: 13735.68 Da Isoelectric Point: 8.3860
>T116410 WP_003205392.1 NZ_CP034725:c5571545-5571201 [Pseudomonas brassicacearum]
MRTLFFETTTFTDTVGHYLTDDEYRLLQSYMLQHPEVGDVIPRTGGFRKLRWFDERRGKGKRGGLRVIYYWLMNDRQFWM
FAIYDKDELENLTSEQEKTLKRAIEAELKVRGTL
MRTLFFETTTFTDTVGHYLTDDEYRLLQSYMLQHPEVGDVIPRTGGFRKLRWFDERRGKGKRGGLRVIYYWLMNDRQFWM
FAIYDKDELENLTSEQEKTLKRAIEAELKVRGTL
Download Length: 345 bp
>T116410 NZ_CP034725:c5571545-5571201 [Pseudomonas brassicacearum]
ATGCGTACCCTATTTTTTGAAACGACTACATTCACCGACACGGTTGGCCATTACCTGACTGATGATGAGTATCGCCTGCT
TCAGTCCTATATGCTGCAGCATCCAGAGGTTGGTGACGTCATACCACGTACCGGCGGCTTTCGTAAGCTGCGCTGGTTCG
ATGAGCGTCGTGGTAAAGGGAAGCGAGGCGGGTTGCGCGTTATTTACTATTGGCTCATGAACGATCGTCAGTTCTGGATG
TTCGCGATTTATGACAAGGACGAGTTGGAAAACCTGACCTCCGAGCAAGAGAAGACGCTCAAACGCGCCATAGAAGCTGA
GTTGAAAGTACGAGGTACCTTATGA
ATGCGTACCCTATTTTTTGAAACGACTACATTCACCGACACGGTTGGCCATTACCTGACTGATGATGAGTATCGCCTGCT
TCAGTCCTATATGCTGCAGCATCCAGAGGTTGGTGACGTCATACCACGTACCGGCGGCTTTCGTAAGCTGCGCTGGTTCG
ATGAGCGTCGTGGTAAAGGGAAGCGAGGCGGGTTGCGCGTTATTTACTATTGGCTCATGAACGATCGTCAGTTCTGGATG
TTCGCGATTTATGACAAGGACGAGTTGGAAAACCTGACCTCCGAGCAAGAGAAGACGCTCAAACGCGCCATAGAAGCTGA
GTTGAAAGTACGAGGTACCTTATGA
Antitoxin
Download Length: 105 a.a. Molecular weight: 11771.76 Da Isoelectric Point: 9.8409
>AT116410 WP_003205391.1 NZ_CP034725:c5571204-5570890 [Pseudomonas brassicacearum]
MKKRDLFAEMMQGVEEMAAHREGKITLRQISIEDKPVPEVSAQEIVALRDKLHMSQAVFAKSIRTSPGTLRNWEQEKSKP
NAQAALLIKLVEKFPDMVERLGAV
MKKRDLFAEMMQGVEEMAAHREGKITLRQISIEDKPVPEVSAQEIVALRDKLHMSQAVFAKSIRTSPGTLRNWEQEKSKP
NAQAALLIKLVEKFPDMVERLGAV
Download Length: 315 bp
>AT116410 NZ_CP034725:c5571204-5570890 [Pseudomonas brassicacearum]
ATGAAAAAGCGCGATCTGTTTGCCGAGATGATGCAAGGCGTCGAGGAGATGGCCGCCCACCGGGAGGGCAAGATTACCCT
TCGCCAGATATCGATCGAAGACAAACCGGTTCCCGAGGTGTCTGCCCAAGAAATCGTGGCGTTGCGCGACAAGCTCCACA
TGTCTCAAGCCGTTTTCGCCAAGAGCATCAGGACCAGTCCAGGTACGCTCAGGAACTGGGAGCAGGAGAAGTCCAAGCCT
AACGCCCAGGCGGCTTTGTTGATCAAGCTGGTCGAGAAGTTTCCAGATATGGTCGAACGGCTTGGCGCTGTTTGA
ATGAAAAAGCGCGATCTGTTTGCCGAGATGATGCAAGGCGTCGAGGAGATGGCCGCCCACCGGGAGGGCAAGATTACCCT
TCGCCAGATATCGATCGAAGACAAACCGGTTCCCGAGGTGTCTGCCCAAGAAATCGTGGCGTTGCGCGACAAGCTCCACA
TGTCTCAAGCCGTTTTCGCCAAGAGCATCAGGACCAGTCCAGGTACGCTCAGGAACTGGGAGCAGGAGAAGTCCAAGCCT
AACGCCCAGGCGGCTTTGTTGATCAAGCTGGTCGAGAAGTTTCCAGATATGGTCGAACGGCTTGGCGCTGTTTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|