Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3198823..3198912 Replicon chromosome
Accession NZ_CP034483
Organism Rahnella aquatilis strain KM05

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3198823..3198912 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3198823..3198912 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EJP80_RS14690 3193970..3195949 + 1980 WP_119261799.1 MBL fold metallo-hydrolase -
EJP80_RS14695 3196008..3196796 + 789 WP_119261800.1 hypothetical protein -
EJP80_RS14700 3196997..3197908 - 912 WP_119261801.1 cation diffusion facilitator family transporter -
EJP80_RS14710 3198574..3198726 + 153 WP_072012305.1 tyrosine-type recombinase/integrase -
- 3198823..3198912 - 90 - - Toxin
EJP80_RS14715 3199068..3199403 - 336 WP_013576173.1 YebY family protein -
EJP80_RS14720 3199455..3200339 - 885 WP_037037430.1 copper homeostasis membrane protein CopD -
EJP80_RS14725 3200343..3200726 - 384 WP_013576175.1 copper homeostasis periplasmic binding protein CopC -
EJP80_RS14730 3200868..3201374 - 507 WP_013576176.1 non-heme ferritin -
EJP80_RS14735 3201781..3202011 + 231 WP_013576177.1 DNA polymerase III subunit theta -
EJP80_RS14740 3202031..3202987 - 957 WP_013576178.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 90 bp

>T116155 NZ_CP034483:c3198912-3198823 [Rahnella aquatilis]
GCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTATTCG
GTCTTTTTTT

Antitoxin


Download         Length: 90 bp

>AT116155 NZ_CP034483:3198823-3198912 [Rahnella aquatilis]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGC

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References