Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1244179..1244450 | Replicon | chromosome |
| Accession | NZ_CP034404 | ||
| Organism | Escherichia coli strain CRE10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1244217..1244320 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1244179..1244450 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EJC75_RS07955 | 1241336..1242775 | + | 1440 | WP_024198516.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EJC75_RS07960 | 1242893..1243129 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EJC75_RS07965 | 1243234..1243425 | + | 192 | WP_000457842.1 | YebW family protein | - |
| EJC75_RS07970 | 1243426..1244082 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1244179..1244450 | + | 272 | - | - | Antitoxin |
| - | 1244217..1244320 | - | 104 | - | - | Toxin |
| EJC75_RS07975 | 1244478..1244819 | - | 342 | WP_000976492.1 | YebY family protein | - |
| EJC75_RS07980 | 1244832..1245704 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| EJC75_RS07985 | 1245708..1246082 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| EJC75_RS07990 | 1246221..1246451 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EJC75_RS07995 | 1246553..1247209 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EJC75_RS08000 | 1247233..1247895 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T115921 NZ_CP034404:c1244320-1244217 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT115921 NZ_CP034404:1244179-1244450 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
