Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 546371..546603 | Replicon | chromosome |
| Accession | NZ_CP034212 | ||
| Organism | Escherichia albertii strain 2010C-3449 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 546373..546475 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 546371..546603 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCF17_RS02795 | 542047..543081 | - | 1035 | Protein_543 | Trk system potassium transporter TrkG | - |
| CCF17_RS02805 | 543751..544239 | - | 489 | Protein_545 | potassium transporter TrkG | - |
| - | 546371..546603 | + | 233 | - | - | Antitoxin |
| - | 546373..546475 | - | 103 | - | - | Toxin |
| CCF17_RS02820 | 546633..546974 | - | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| CCF17_RS02825 | 546987..547859 | - | 873 | WP_151401035.1 | copper homeostasis membrane protein CopD | - |
| CCF17_RS02830 | 547863..548240 | - | 378 | WP_151401036.1 | CopC domain-containing protein YobA | - |
| CCF17_RS02835 | 548379..548609 | + | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| CCF17_RS02840 | 548775..548987 | + | 213 | Protein_550 | carbon-nitrogen hydrolase family protein YobB | - |
| CCF17_RS02845 | 549011..549673 | + | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | espJ | 520091..567289 | 47198 | |
| - | flank | IS/Tn | - | - | 543518..543793 | 275 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T115477 NZ_CP034212:c546475-546373 [Escherichia albertii]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT115477 NZ_CP034212:546371-546603 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
