Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 892799..893031 | Replicon | chromosome |
| Accession | NZ_CP034162 | ||
| Organism | Escherichia albertii strain 06-3542 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 892927..893029 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 892799..893031 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCS91_RS04430 | 889729..890391 | - | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
| CCS91_RS04435 | 890415..890627 | - | 213 | Protein_832 | carbon-nitrogen hydrolase family protein | - |
| CCS91_RS04440 | 890793..891023 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| CCS91_RS04445 | 891162..891539 | + | 378 | WP_059267604.1 | CopC domain-containing protein YobA | - |
| CCS91_RS04450 | 891543..892415 | + | 873 | WP_059276071.1 | copper homeostasis membrane protein CopD | - |
| CCS91_RS04455 | 892428..892769 | + | 342 | WP_000976487.1 | YebY family protein | - |
| - | 892799..893031 | - | 233 | - | - | Antitoxin |
| - | 892927..893029 | + | 103 | - | - | Toxin |
| CCS91_RS04465 | 894786..895106 | + | 321 | WP_000086028.1 | hypothetical protein | - |
| CCS91_RS04470 | 895179..896636 | + | 1458 | WP_024165002.1 | Trk system potassium transporter TrkG | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | espJ | 886648..909586 | 22938 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T115390 NZ_CP034162:892927-893029 [Escherichia albertii]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT115390 NZ_CP034162:c893031-892799 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
