Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2462283..2462554 | Replicon | chromosome |
| Accession | NZ_CP034106 | ||
| Organism | Escherichia coli strain RCAD0514 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2462413..2462516 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2462283..2462554 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGA47_RS11725 | 2458838..2459500 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EGA47_RS11730 | 2459524..2460180 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| EGA47_RS11735 | 2460282..2460512 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EGA47_RS11740 | 2460651..2461025 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EGA47_RS11745 | 2461029..2461901 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| EGA47_RS11750 | 2461914..2462255 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2462283..2462554 | - | 272 | - | - | Antitoxin |
| - | 2462413..2462516 | + | 104 | - | - | Toxin |
| EGA47_RS11755 | 2462651..2463307 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| EGA47_RS11760 | 2463308..2463499 | - | 192 | WP_001338167.1 | YebW family protein | - |
| EGA47_RS11765 | 2463604..2463840 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| EGA47_RS11770 | 2463958..2465397 | - | 1440 | WP_024238487.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T115253 NZ_CP034106:2462413-2462516 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT115253 NZ_CP034106:c2462554-2462283 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
