Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2645011..2645105 | Replicon | chromosome |
| Accession | NZ_CP034036 | ||
| Organism | Brenneria nigrifluens DSM 30175 = ATCC 13028 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2645015..2645105 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2645011..2645105 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EH206_RS12465 | 2642414..2643514 | + | 1101 | WP_009113121.1 | recombinase RecT | - |
| EH206_RS12470 | 2643603..2643872 | + | 270 | WP_009113122.1 | excisionase | - |
| EH206_RS12475 | 2643847..2644935 | + | 1089 | WP_009113123.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2645011..2645105 | + | 95 | - | - | Antitoxin |
| - | 2645015..2645105 | - | 91 | - | - | Toxin |
| EH206_RS12480 | 2645254..2645607 | - | 354 | WP_136163872.1 | YebY family protein | - |
| EH206_RS12485 | 2645861..2646376 | - | 516 | WP_009113125.1 | non-heme ferritin | - |
| EH206_RS12490 | 2646707..2646937 | + | 231 | WP_009113126.1 | DNA polymerase III subunit theta | - |
| EH206_RS12495 | 2647222..2649258 | - | 2037 | WP_009113128.1 | prolyl oligopeptidase family serine peptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | nueA / msbA / fliA / ugd / fliS / fliE / fliF / fliG / fliH / fliI / fliJ / fliL / fliM / fliN / fliP / fliQ / fliR / flgJ / flgI / flgH / flgG / flgF / flgC / flgB / flhA / flhB / cheZ / cheY / cheB / cheR / cheW / cheA / motB / motA / flhC / flhD | 2639042..2941349 | 302307 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 91 bp
>T114998 NZ_CP034036:c2645105-2645015 [Brenneria nigrifluens DSM 30175 = ATCC 13028]
AGCTTGTATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGATACAGGAATCGTATTC
GGTCTTTTTTT
AGCTTGTATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGATACAGGAATCGTATTC
GGTCTTTTTTT
Antitoxin
Download Length: 95 bp
>AT114998 NZ_CP034036:2645011-2645105 [Brenneria nigrifluens DSM 30175 = ATCC 13028]
AGTTAAAAAAAGACCGAATACGATTCCTGTATCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTTATACAAGCT
AGTTAAAAAAAGACCGAATACGATTCCTGTATCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTTATACAAGCT
