Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1318129..1318397 | Replicon | chromosome |
| Accession | NZ_CP033762 | ||
| Organism | Escherichia coli strain FDAARGOS_536 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1318167..1318269 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1318129..1318397 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGX93_RS07325 | 1315286..1316725 | + | 1440 | WP_001298454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EGX93_RS07330 | 1316843..1317079 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EGX93_RS07335 | 1317184..1317375 | + | 192 | WP_001317886.1 | YebW family protein | - |
| EGX93_RS07340 | 1317376..1318032 | - | 657 | WP_001357783.1 | protein-serine/threonine phosphatase | - |
| - | 1318129..1318397 | + | 269 | - | - | Antitoxin |
| - | 1318167..1318269 | - | 103 | - | - | Toxin |
| EGX93_RS07345 | 1318427..1318768 | - | 342 | WP_000977376.1 | YebY family protein | - |
| EGX93_RS07350 | 1318781..1319653 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| EGX93_RS07355 | 1319657..1320031 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EGX93_RS07360 | 1320170..1320400 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EGX93_RS07365 | 1320501..1321157 | + | 657 | WP_024009090.1 | carbon-nitrogen hydrolase family protein | - |
| EGX93_RS07370 | 1321180..1321842 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T114269 NZ_CP033762:c1318269-1318167 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT114269 NZ_CP033762:1318129-1318397 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
