Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 984640..984734 | Replicon | chromosome |
| Accession | NZ_CP033711 | ||
| Organism | Yersinia pseudotuberculosis strain FDAARGOS_582 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 984641..984734 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 984640..984734 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGX44_RS05205 | 980484..980867 | + | 384 | WP_158499507.1 | hypothetical protein | - |
| EGX44_RS05210 | 980889..981863 | + | 975 | WP_012413651.1 | hypothetical protein | - |
| EGX44_RS05215 | 982280..982696 | + | 417 | Protein_895 | hypothetical protein | - |
| EGX44_RS05220 | 982640..983848 | - | 1209 | WP_002209743.1 | IS256 family transposase | - |
| EGX44_RS05225 | 984055..984381 | + | 327 | WP_002211097.1 | DUF1493 family protein | - |
| - | 984640..984734 | + | 95 | - | - | Antitoxin |
| - | 984641..984734 | - | 94 | - | - | Toxin |
| EGX44_RS05235 | 984904..985245 | - | 342 | WP_002211095.1 | YebY family protein | - |
| EGX44_RS05240 | 985342..986226 | - | 885 | WP_012304224.1 | copper homeostasis membrane protein CopD | - |
| EGX44_RS05245 | 986229..986615 | - | 387 | WP_002211093.1 | CopC domain-containing protein YobA | - |
| EGX44_RS05250 | 986994..987503 | - | 510 | WP_002211092.1 | non-heme ferritin | - |
| EGX44_RS05255 | 987904..988134 | + | 231 | WP_002211091.1 | DNA polymerase III subunit theta | - |
| EGX44_RS05260 | 988194..989144 | - | 951 | WP_011192157.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 982640..983848 | 1208 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T114108 NZ_CP033711:c984734-984641 [Yersinia pseudotuberculosis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 95 bp
>AT114108 NZ_CP033711:984640-984734 [Yersinia pseudotuberculosis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
