Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1969775..1969978 | Replicon | chromosome |
| Accession | NZ_CP033102 | ||
| Organism | Enterobacter hormaechei strain L51 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1969868..1969971 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1969775..1969978 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D8768_RS09325 | 1966325..1966987 | - | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
| D8768_RS09330 | 1967012..1967650 | - | 639 | WP_045623249.1 | carbon-nitrogen hydrolase family protein | - |
| D8768_RS09335 | 1967762..1967992 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| D8768_RS09340 | 1968130..1968501 | + | 372 | WP_157508616.1 | CopC domain-containing protein YobA | - |
| D8768_RS09345 | 1968503..1969372 | + | 870 | WP_045623248.1 | copper homeostasis membrane protein CopD | - |
| D8768_RS09350 | 1969389..1969727 | + | 339 | WP_022648464.1 | YebY family protein | - |
| - | 1969775..1969978 | - | 204 | - | - | Antitoxin |
| - | 1969868..1969971 | + | 104 | - | - | Toxin |
| D8768_RS09355 | 1970049..1971134 | - | 1086 | WP_157507326.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| D8768_RS09360 | 1971103..1971375 | - | 273 | WP_023300430.1 | hypothetical protein | - |
| D8768_RS09365 | 1971534..1971749 | - | 216 | WP_157507328.1 | DUF550 domain-containing protein | - |
| D8768_RS09370 | 1971759..1971998 | - | 240 | WP_032103556.1 | DUF4222 domain-containing protein | - |
| D8768_RS09375 | 1971976..1972314 | - | 339 | WP_044158833.1 | DUF2591 family protein | - |
| D8768_RS09380 | 1972314..1972532 | - | 219 | WP_157507330.1 | TraR/DksA family transcriptional regulator | - |
| D8768_RS09385 | 1972624..1972854 | - | 231 | WP_006176201.1 | hypothetical protein | - |
| D8768_RS09390 | 1972851..1973069 | - | 219 | WP_045617910.1 | hypothetical protein | - |
| D8768_RS09395 | 1973066..1974226 | - | 1161 | WP_157507332.1 | DNA cytosine methyltransferase | - |
| D8768_RS09400 | 1974223..1974882 | - | 660 | WP_157507334.1 | DNA methyltransferase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrB / gtrA | 1964270..2035422 | 71152 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T113144 NZ_CP033102:1969868-1969971 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT113144 NZ_CP033102:c1969978-1969775 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
