Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3506883..3507026 | Replicon | chromosome |
| Accession | NZ_CP032916 | ||
| Organism | Enterobacter roggenkampii strain ECY546 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3506918..3507021 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3506883..3507026 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D8675_RS17840 | 3503366..3504028 | - | 663 | WP_008500463.1 | exodeoxyribonuclease X | - |
| D8675_RS17845 | 3504053..3504703 | - | 651 | WP_023325513.1 | carbon-nitrogen hydrolase family protein | - |
| D8675_RS17850 | 3504814..3505044 | - | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| D8675_RS17855 | 3505182..3505553 | + | 372 | WP_023344420.1 | CopC domain-containing protein YobA | - |
| D8675_RS17860 | 3505555..3506424 | + | 870 | WP_023325511.1 | copper homeostasis membrane protein CopD | - |
| D8675_RS17865 | 3506441..3506779 | + | 339 | WP_008500468.1 | YebY family protein | - |
| - | 3506883..3507026 | - | 144 | - | - | Antitoxin |
| - | 3506918..3507021 | + | 104 | - | - | Toxin |
| D8675_RS17870 | 3507185..3508126 | - | 942 | WP_129694174.1 | VirK/YbjX family protein | - |
| D8675_RS17875 | 3508303..3508947 | + | 645 | WP_045372529.1 | protein-serine/threonine phosphatase | - |
| D8675_RS17880 | 3508982..3509221 | - | 240 | WP_008500472.1 | YebV family protein | - |
| D8675_RS17885 | 3509328..3510770 | - | 1443 | WP_045372526.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T112845 NZ_CP032916:3506918-3507021 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT112845 NZ_CP032916:c3507026-3506883 [Enterobacter roggenkampii]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
