Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2439492..2439763 | Replicon | chromosome |
| Accession | NZ_CP032791 | ||
| Organism | Escherichia coli strain NZRM4165 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2439530..2439633 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2439492..2439763 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D8Z75_RS12070 | 2436649..2438088 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| D8Z75_RS12075 | 2438206..2438442 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| D8Z75_RS12080 | 2438547..2438738 | + | 192 | WP_001296140.1 | YebW family protein | - |
| D8Z75_RS12085 | 2438739..2439395 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 2439492..2439763 | + | 272 | - | - | Antitoxin |
| - | 2439530..2439633 | - | 104 | - | - | Toxin |
| D8Z75_RS12090 | 2439791..2440132 | - | 342 | WP_000976483.1 | YebY family protein | - |
| D8Z75_RS12095 | 2440145..2441017 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| D8Z75_RS12100 | 2441021..2441395 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| D8Z75_RS12105 | 2441534..2441764 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| D8Z75_RS12110 | 2441866..2442522 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| D8Z75_RS12115 | 2442546..2443208 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T112263 NZ_CP032791:c2439633-2439530 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT112263 NZ_CP032791:2439492-2439763 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
