Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4348300..4348568 | Replicon | chromosome |
| Accession | NZ_CP032204 | ||
| Organism | Escherichia coli strain AR_0013 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4348338..4348440 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4348300..4348568 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM340_RS22175 | 4345457..4346896 | + | 1440 | WP_012602287.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM340_RS22180 | 4347014..4347250 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AM340_RS22185 | 4347355..4347546 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AM340_RS22190 | 4347547..4348203 | - | 657 | WP_000814509.1 | protein-serine/threonine phosphatase | - |
| - | 4348300..4348568 | + | 269 | - | - | Antitoxin |
| - | 4348338..4348440 | - | 103 | - | - | Toxin |
| AM340_RS22195 | 4348597..4348938 | - | 342 | WP_000976472.1 | YebY family protein | - |
| AM340_RS22200 | 4348951..4349823 | - | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| AM340_RS22205 | 4349827..4350201 | - | 375 | WP_000168745.1 | CopC domain-containing protein YobA | - |
| AM340_RS22210 | 4350340..4350570 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AM340_RS22215 | 4350672..4351328 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| AM340_RS22220 | 4351352..4352014 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T111366 NZ_CP032204:c4348440-4348338 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT111366 NZ_CP032204:4348300-4348568 [Escherichia coli]
AAAGTCAGCGAAGGGAATGATTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGATTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
