Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5196667..5196812 | Replicon | chromosome |
| Accession | NZ_CP032178 | ||
| Organism | Klebsiella pneumoniae strain AR_0135 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5196674..5196776 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5196667..5196812 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM382_RS26710 | 5192199..5193632 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM382_RS26715 | 5193748..5193987 | + | 240 | WP_002911393.1 | YebV family protein | - |
| AM382_RS26720 | 5194085..5194276 | + | 192 | WP_002911395.1 | YebW family protein | - |
| AM382_RS26725 | 5194273..5194926 | - | 654 | WP_032418800.1 | protein-serine/threonine phosphatase | - |
| AM382_RS26730 | 5195083..5196051 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| AM382_RS29055 | 5196156..5196299 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 5196667..5196812 | + | 146 | - | - | Antitoxin |
| - | 5196674..5196776 | - | 103 | - | - | Toxin |
| AM382_RS26740 | 5196935..5197273 | - | 339 | WP_002911404.1 | YebY family protein | - |
| AM382_RS26745 | 5197290..5198159 | - | 870 | WP_023282759.1 | copper homeostasis membrane protein CopD | - |
| AM382_RS26750 | 5198163..5198537 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AM382_RS26755 | 5198650..5198880 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AM382_RS26760 | 5198959..5199618 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AM382_RS26765 | 5199622..5201682 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T111262 NZ_CP032178:c5196776-5196674 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT111262 NZ_CP032178:5196667-5196812 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
