Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3816467..3816735 | Replicon | chromosome |
| Accession | NZ_CP032066 | ||
| Organism | Escherichia coli strain E166 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3816595..3816697 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3816467..3816735 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D2J89_RS18140 | 3813020..3813682 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| D2J89_RS18145 | 3813706..3814362 | - | 657 | WP_000011673.1 | carbon-nitrogen hydrolase family protein YobB | - |
| D2J89_RS18150 | 3814464..3814694 | - | 231 | WP_000916759.1 | DNA polymerase III subunit theta | - |
| D2J89_RS18155 | 3814833..3815207 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| D2J89_RS18160 | 3815211..3816083 | + | 873 | WP_000879316.1 | copper homeostasis membrane protein CopD | - |
| D2J89_RS18165 | 3816096..3816437 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3816467..3816735 | - | 269 | - | - | Antitoxin |
| - | 3816595..3816697 | + | 103 | - | - | Toxin |
| D2J89_RS18170 | 3816832..3817488 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| D2J89_RS18175 | 3817489..3817680 | - | 192 | WP_001317886.1 | YebW family protein | - |
| D2J89_RS18180 | 3817785..3818021 | - | 237 | WP_001295499.1 | YebV family protein | - |
| D2J89_RS18185 | 3818139..3819578 | - | 1440 | WP_001317885.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T110967 NZ_CP032066:3816595-3816697 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT110967 NZ_CP032066:c3816735-3816467 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
