Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 949265..949410 | Replicon | chromosome |
| Accession | NZ_CP031934 | ||
| Organism | Klebsiella pneumoniae strain GZ-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 949272..949374 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 949265..949410 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1368_RS04780 | 944797..946230 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| D1368_RS04785 | 946346..946585 | + | 240 | WP_002911393.1 | YebV family protein | - |
| D1368_RS04790 | 946683..946874 | + | 192 | WP_002911395.1 | YebW family protein | - |
| D1368_RS04795 | 946871..947524 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| D1368_RS04800 | 947681..948649 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| D1368_RS04805 | 948754..948897 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 949265..949410 | + | 146 | - | - | Antitoxin |
| - | 949272..949374 | - | 103 | - | - | Toxin |
| D1368_RS04810 | 949533..949871 | - | 339 | WP_002911404.1 | YebY family protein | - |
| D1368_RS04815 | 949888..950757 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| D1368_RS04820 | 950761..951135 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| D1368_RS04825 | 951248..951478 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| D1368_RS04830 | 951557..952216 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| D1368_RS04835 | 952220..954280 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T110816 NZ_CP031934:c949374-949272 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT110816 NZ_CP031934:949265-949410 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
