Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2062358..2062629 | Replicon | chromosome |
| Accession | NZ_CP031898 | ||
| Organism | Escherichia coli O113:H21 strain FWSEC0010 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2062488..2062591 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2062358..2062629 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C8201_RS10070 | 2058914..2059576 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C8201_RS10075 | 2059600..2060255 | - | 656 | Protein_1926 | carbon-nitrogen hydrolase family protein | - |
| C8201_RS10080 | 2060357..2060587 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C8201_RS10085 | 2060726..2061100 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C8201_RS10090 | 2061104..2061976 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C8201_RS10095 | 2061989..2062330 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2062358..2062629 | - | 272 | - | - | Antitoxin |
| - | 2062488..2062591 | + | 104 | - | - | Toxin |
| C8201_RS10100 | 2062726..2063382 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| C8201_RS10105 | 2063383..2063574 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C8201_RS10110 | 2063679..2063915 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C8201_RS10115 | 2064033..2065472 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T110533 NZ_CP031898:2062488-2062591 [Escherichia coli O113:H21]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT110533 NZ_CP031898:c2062629-2062358 [Escherichia coli O113:H21]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
