Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YoeB-YefM
Location 2715489..2715991 Replicon chromosome
Accession NZ_CP031848
Organism Marinobacter sp. Arc7-DN-1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag D0851_RS12735 Protein ID WP_117618974.1
Coordinates 2715489..2715743 (-) Length 85 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag D0851_RS12740 Protein ID WP_117618975.1
Coordinates 2715740..2715991 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
D0851_RS12720 2711212..2711544 + 333 WP_117618972.1 YnfA family protein -
D0851_RS12725 2711613..2712934 - 1322 Protein_2472 group II intron reverse transcriptase/maturase -
D0851_RS12730 2714053..2715393 + 1341 WP_117618973.1 group II intron reverse transcriptase/maturase -
D0851_RS12735 2715489..2715743 - 255 WP_117618974.1 Txe/YoeB family addiction module toxin Toxin
D0851_RS12740 2715740..2715991 - 252 WP_117618975.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
D0851_RS12745 2716482..2717631 + 1150 Protein_2476 reverse transcriptase N-terminal domain-containing protein -
D0851_RS12755 2718075..2718401 + 327 WP_117618977.1 type II toxin-antitoxin system HicB family antitoxin -
D0851_RS12760 2719160..2719414 + 255 WP_117618978.1 hypothetical protein -
D0851_RS12765 2719878..2720120 - 243 WP_205422203.1 hypothetical protein -
D0851_RS12770 2720341..2720595 + 255 WP_117618979.1 type II toxin-antitoxin system HicA family toxin -
D0851_RS12775 2720592..2720927 + 336 WP_117618980.1 type II toxin-antitoxin system HicB family antitoxin -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10248.87 Da        Isoelectric Point: 9.8162

>T110346 WP_117618974.1 NZ_CP031848:c2715743-2715489 [Marinobacter sp. Arc7-DN-1]
MKLIFSENAWEDYLYWQKTDKKILNRINKLIKEIKREPFEGVGKPEPLKHSLAGYWSRRINEEHRIVYKVTDDALLIAQL
RYHY

Download         Length: 255 bp

>T110346 NZ_CP031848:c2715743-2715489 [Marinobacter sp. Arc7-DN-1]
ATGAAACTTATCTTCTCCGAGAACGCCTGGGAAGACTATCTGTACTGGCAGAAAACCGACAAAAAAATCCTGAACCGAAT
CAACAAGCTTATCAAGGAGATCAAACGAGAACCATTCGAGGGAGTGGGCAAACCGGAACCCCTCAAACACAGCCTCGCTG
GTTACTGGTCCCGCCGAATTAACGAAGAACACCGCATCGTTTACAAGGTCACGGATGACGCTTTGCTCATTGCCCAGCTC
CGGTACCACTACTGA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9255.47 Da        Isoelectric Point: 4.4750

>AT110346 WP_117618975.1 NZ_CP031848:c2715991-2715740 [Marinobacter sp. Arc7-DN-1]
MDAISYTAARTNLAKTMEQVCEDHSPVVITRSKSQSVVMISLEDYEALQETAYLLRAPKNARRLLESVAELEQGGGQEKE
LLE

Download         Length: 252 bp

>AT110346 NZ_CP031848:c2715991-2715740 [Marinobacter sp. Arc7-DN-1]
ATGGATGCCATTAGCTACACAGCCGCTAGAACCAATCTAGCAAAAACCATGGAGCAGGTCTGTGAAGACCATTCTCCTGT
GGTCATCACCCGAAGCAAGTCGCAATCCGTTGTGATGATCTCCCTTGAGGACTATGAGGCGTTGCAAGAGACCGCATACC
TTCTGCGCGCTCCCAAAAACGCCCGTCGTTTGCTGGAATCCGTTGCCGAACTGGAGCAAGGCGGTGGGCAGGAAAAGGAA
CTTCTTGAATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References