Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1849523..1849668 | Replicon | chromosome |
| Accession | NZ_CP031814 | ||
| Organism | Klebsiella pneumoniae strain KSB1_7F-sc-2280268 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1849559..1849661 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1849523..1849668 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0899_RS09190 | 1844653..1846713 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| D0899_RS09195 | 1846717..1847376 | - | 660 | WP_117082788.1 | exodeoxyribonuclease X | - |
| D0899_RS09200 | 1847455..1847685 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| D0899_RS09205 | 1847798..1848172 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| D0899_RS09210 | 1848176..1849045 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| D0899_RS09215 | 1849062..1849400 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1849523..1849668 | - | 146 | - | - | Antitoxin |
| - | 1849559..1849661 | + | 103 | - | - | Toxin |
| D0899_RS27565 | 1850036..1850179 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| D0899_RS09225 | 1850284..1851252 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| D0899_RS09230 | 1851409..1852062 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| D0899_RS09235 | 1852059..1852250 | - | 192 | WP_002911395.1 | YebW family protein | - |
| D0899_RS09240 | 1852348..1852587 | - | 240 | WP_002911393.1 | YebV family protein | - |
| D0899_RS09245 | 1852703..1854136 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T110206 NZ_CP031814:1849559-1849661 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT110206 NZ_CP031814:c1849668-1849523 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
