Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/COG4683-HTH_37 |
| Location | 38738..39395 | Replicon | plasmid p3 |
| Accession | NZ_CP031362 | ||
| Organism | Salmonella enterica subsp. enterica serovar Heidelberg strain 5 | ||
Toxin (Protein)
| Gene name | higB | Uniprot ID | U3PDC3 |
| Locus tag | DXF95_RS24095 | Protein ID | WP_000270043.1 |
| Coordinates | 39045..39395 (-) | Length | 117 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | DXF95_RS24090 | Protein ID | WP_000124640.1 |
| Coordinates | 38738..39040 (-) | Length | 101 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXF95_RS24040 | 34361..34789 | + | 429 | WP_000591074.1 | hypothetical protein | - |
| DXF95_RS24045 | 34846..35205 | + | 360 | WP_000422768.1 | hypothetical protein | - |
| DXF95_RS24050 | 35205..35651 | + | 447 | WP_000919345.1 | Fe3+-siderophore ABC transporter permease | - |
| DXF95_RS24055 | 35648..36166 | + | 519 | WP_020833600.1 | hypothetical protein | - |
| DXF95_RS24060 | 36166..36396 | + | 231 | WP_020833601.1 | hypothetical protein | - |
| DXF95_RS24065 | 36383..37240 | + | 858 | WP_052870225.1 | hypothetical protein | - |
| DXF95_RS24075 | 37471..37998 | + | 528 | WP_020833604.1 | thermonuclease family protein | - |
| DXF95_RS24080 | 38056..38328 | + | 273 | WP_020833605.1 | HU family DNA-binding protein | - |
| DXF95_RS24085 | 38417..38710 | + | 294 | WP_020833606.1 | chromosome segregation protein ParM | - |
| DXF95_RS24090 | 38738..39040 | - | 303 | WP_000124640.1 | XRE family transcriptional regulator | Antitoxin |
| DXF95_RS24095 | 39045..39395 | - | 351 | WP_000270043.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| DXF95_RS24100 | 39558..40106 | + | 549 | WP_001061574.1 | transcriptional regulator | - |
| DXF95_RS24110 | 40447..40641 | + | 195 | WP_000343597.1 | hypothetical protein | - |
| DXF95_RS24115 | 40649..41020 | + | 372 | WP_020833608.1 | hypothetical protein | - |
| DXF95_RS24120 | 41013..41483 | + | 471 | WP_001281821.1 | hypothetical protein | - |
| DXF95_RS24125 | 41492..41848 | - | 357 | WP_020833609.1 | hypothetical protein | - |
| DXF95_RS24130 | 41945..42433 | + | 489 | WP_001273096.1 | DUF1643 domain-containing protein | - |
| DXF95_RS24135 | 42436..42933 | + | 498 | WP_000062185.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | - | - | 1..190543 | 190543 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 117 a.a. Molecular weight: 17237.68 Da Isoelectric Point: 5.5500
>T109145 WP_000270043.1 NZ_CP031362:c39395-39045 [Salmonella enterica subsp. enterica serovar Heidelberg]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
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FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
Download Length: 351 bp
>T109145 NZ_CP031362:c39395-39045 [Salmonella enterica subsp. enterica serovar Heidelberg]
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Antitoxin
Download Length: 101 a.a. Molecular weight: 14882.85 Da Isoelectric Point: 5.5500
>AT109145 WP_000124640.1 NZ_CP031362:c39040-38738 [Salmonella enterica subsp. enterica serovar Heidelberg]
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Download Length: 303 bp
>AT109145 NZ_CP031362:c39040-38738 [Salmonella enterica subsp. enterica serovar Heidelberg]
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Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|