Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1953639..1953757 | Replicon | chromosome |
| Accession | NZ_CP031316 | ||
| Organism | Serratia marcescens strain N4-5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1953661..1953757 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1953639..1953757 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Smn45_RS09360 | 1948884..1949279 | + | 396 | WP_115435873.1 | RidA family protein | - |
| Smn45_RS09365 | 1949436..1950389 | + | 954 | WP_004928848.1 | prolyl aminopeptidase | - |
| Smn45_RS09370 | 1950422..1950652 | - | 231 | WP_016928156.1 | DNA polymerase III subunit theta | - |
| Smn45_RS09375 | 1950997..1951515 | + | 519 | WP_015377481.1 | non-heme ferritin | - |
| Smn45_RS09380 | 1951808..1952224 | + | 417 | WP_046686875.1 | CopC domain-containing protein YobA | - |
| Smn45_RS09385 | 1952227..1953108 | + | 882 | WP_115435874.1 | copper homeostasis membrane protein CopD | - |
| Smn45_RS09390 | 1953178..1953519 | + | 342 | WP_016928154.1 | YebY family protein | - |
| - | 1953639..1953757 | - | 119 | - | - | Antitoxin |
| - | 1953661..1953757 | + | 97 | - | - | Toxin |
| Smn45_RS09400 | 1954009..1954413 | + | 405 | WP_115435876.1 | hypothetical protein | - |
| Smn45_RS09405 | 1954410..1954628 | - | 219 | WP_033640661.1 | hypothetical protein | - |
| Smn45_RS09410 | 1954703..1955053 | - | 351 | WP_033640660.1 | hypothetical protein | - |
| Smn45_RS09415 | 1955302..1955652 | + | 351 | WP_115435877.1 | DUF4377 domain-containing protein | - |
| Smn45_RS09420 | 1955836..1957035 | + | 1200 | WP_004940952.1 | trans-2-enoyl-CoA reductase family protein | - |
| Smn45_RS09425 | 1957262..1957480 | + | 219 | WP_115435878.1 | hypothetical protein | - |
| Smn45_RS09430 | 1957652..1957957 | + | 306 | WP_016928132.1 | hypothetical protein | - |
| Smn45_RS09435 | 1958006..1958341 | + | 336 | WP_016928131.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T108888 NZ_CP031316:1953661-1953757 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 119 bp
>AT108888 NZ_CP031316:c1953757-1953639 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAG
